BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS312C06f (521 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_58485| Best HMM Match : COX2 (HMM E-Value=0) 124 4e-29 SB_14168| Best HMM Match : COX2 (HMM E-Value=0) 124 4e-29 SB_12233| Best HMM Match : COX2 (HMM E-Value=0) 123 1e-28 SB_31570| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1 >SB_58485| Best HMM Match : COX2 (HMM E-Value=0) Length = 239 Score = 124 bits (299), Expect = 4e-29 Identities = 62/138 (44%), Positives = 85/138 (61%), Gaps = 2/138 (1%) Frame = +3 Query: 114 RFLLEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXXITLKSIGHQ*Y*RYEYSD 293 R+L++G ++E+I TIIPA LIFIA +T+K++GHQ Y YEYSD Sbjct: 61 RYLVDGTLLEVIWTIIPAIILIFIAFPSLKLLYLMDEVMDPALTIKAVGHQWYWSYEYSD 120 Query: 294 FNN--IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXXTATDVIHS*TIPSLGV 467 + + +EFDSY++P+ ++ +FRLL+VD TA DVIHS +P+L V Sbjct: 121 YQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHVRVLITAADVIHSFAVPALAV 180 Query: 468 KVDANPGRLNQTNFFINR 521 K+DA PGRLNQT FFI R Sbjct: 181 KMDAVPGRLNQTGFFIKR 198 >SB_14168| Best HMM Match : COX2 (HMM E-Value=0) Length = 239 Score = 124 bits (299), Expect = 4e-29 Identities = 62/138 (44%), Positives = 85/138 (61%), Gaps = 2/138 (1%) Frame = +3 Query: 114 RFLLEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXXITLKSIGHQ*Y*RYEYSD 293 R+L++G ++E+I TIIPA LIFIA +T+K++GHQ Y YEYSD Sbjct: 61 RYLVDGTLLEVIWTIIPAIILIFIAFPSLKLLYLMDEVMDPALTIKAVGHQWYWSYEYSD 120 Query: 294 FNN--IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXXTATDVIHS*TIPSLGV 467 + + +EFDSY++P+ ++ +FRLL+VD TA DVIHS +P+L V Sbjct: 121 YQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHVRVLITAADVIHSFAVPALAV 180 Query: 468 KVDANPGRLNQTNFFINR 521 K+DA PGRLNQT FFI R Sbjct: 181 KMDAVPGRLNQTGFFIKR 198 >SB_12233| Best HMM Match : COX2 (HMM E-Value=0) Length = 219 Score = 123 bits (296), Expect = 1e-28 Identities = 61/138 (44%), Positives = 85/138 (61%), Gaps = 2/138 (1%) Frame = +3 Query: 114 RFLLEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXXITLKSIGHQ*Y*RYEYSD 293 R+L++G ++E+I TIIPA LIFIA +T+K++GHQ Y YEYSD Sbjct: 61 RYLVDGTLLEVIWTIIPAIILIFIAFPSLKLLYLMDEVMDPALTIKAVGHQWYWSYEYSD 120 Query: 294 FNN--IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXXTATDVIHS*TIPSLGV 467 + + +EFDSY++P+ ++ +FRLL+VD TA DVIHS +P+L V Sbjct: 121 YQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHVRVLITAADVIHSFAVPALAV 180 Query: 468 KVDANPGRLNQTNFFINR 521 K+DA PGRLNQT FFI + Sbjct: 181 KMDAVPGRLNQTGFFIKK 198 >SB_31570| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 124 Score = 27.5 bits (58), Expect = 7.1 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = -3 Query: 381 YDYLHLIVGIHYFLFHWMGLYMSQIQYY*NLNIHIFS 271 YD +H IHY H+ ++ IQYY NIH ++ Sbjct: 31 YDNIHYD-NIHYDNIHYDNIHYDNIQYY---NIHYYN 63 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,113,931 Number of Sequences: 59808 Number of extensions: 130751 Number of successful extensions: 223 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 195 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 217 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1172759136 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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