Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312C04f
(521 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181; Eukary... 291 9e-78
UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeb... 173 3e-42
UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5... 145 5e-34
UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1; Encephal... 126 2e-28
UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella... 122 7e-27
UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n... 118 1e-25
UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus M... 118 1e-25
UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2; Methano... 116 2e-25
UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12; Archae... 115 6e-25
UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 111 7e-24
UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2; Sulfolo... 109 5e-23
UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8; Euryarc... 107 2e-22
UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5; Thermop... 106 4e-22
UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultu... 105 6e-22
UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcu... 103 2e-21
UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3; Halobac... 99 3e-20
UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3; Methano... 100 4e-20
UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 99 7e-20
UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3; Thermop... 95 1e-18
UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep... 85 7e-16
UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1... 85 9e-16
UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n... 61 2e-08
UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3; Euth... 60 4e-08
UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein pr... 60 4e-08
UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n... 57 2e-07
UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1; Arabid... 54 2e-06
UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein pr... 54 2e-06
UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein pr... 54 2e-06
UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lambl... 52 1e-05
UniRef50_Q54XG2 Cluster: Putative uncharacterized protein; n=1; ... 50 4e-05
UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3; Betapr... 50 4e-05
UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1... 49 6e-05
UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=... 49 7e-05
UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein pr... 49 7e-05
UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6; Bacteria... 48 1e-04
UniRef50_UPI0000E4A461 Cluster: PREDICTED: similar to MGC69249 p... 48 1e-04
UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2; ... 47 2e-04
UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1; ... 47 2e-04
UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37; Bacteri... 47 3e-04
UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1; Bdello... 46 7e-04
UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n... 46 7e-04
UniRef50_UPI0000498936 Cluster: U3 small nucleolar ribonucleopro... 45 0.001
UniRef50_A5USG3 Cluster: Ribosomal protein S4; n=4; Chloroflexac... 44 0.002
UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1; Calycul... 44 0.002
UniRef50_A2E3D0 Cluster: S4 domain containing protein; n=1; Tric... 44 0.002
UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole ge... 44 0.003
UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;... 43 0.004
UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellu... 43 0.005
UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19; Bacteri... 43 0.005
UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17; Bacteri... 42 0.006
UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2; ... 42 0.006
UniRef50_A6DLN6 Cluster: 30S ribosomal protein S4; n=1; Lentisph... 42 0.011
UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10; Conife... 42 0.011
UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13; Clost... 42 0.011
UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellul... 41 0.015
UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;... 41 0.020
UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa... 41 0.020
UniRef50_Q9XPI8 Cluster: Ribosomal protein S4; n=2; Dictyosteliu... 41 0.020
UniRef50_A4EA85 Cluster: Putative uncharacterized protein; n=1; ... 40 0.026
UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1; Algoriph... 40 0.026
UniRef50_Q382E4 Cluster: U3 small nucleolar ribonucleoprotein pr... 40 0.026
UniRef50_Q9G884 Cluster: Ribosomal protein S4; n=1; Malawimonas ... 40 0.035
UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2; Cystob... 40 0.035
UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4; n... 40 0.035
UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=... 39 0.060
UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8; Ricketts... 38 0.14
UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20; Actinob... 38 0.14
UniRef50_Q06J34 Cluster: Chloroplast 30S ribosomal protein S4; n... 38 0.14
UniRef50_Q01688 Cluster: Putative 40S ribosomal protein S4-like;... 38 0.18
UniRef50_Q5LNM2 Cluster: 30S ribosomal protein S4; n=86; Bacteri... 38 0.18
UniRef50_Q7NAV0 Cluster: 30S ribosomal protein S4; n=11; Mollicu... 38 0.18
UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14; Bacteri... 37 0.24
UniRef50_O51560 Cluster: 30S ribosomal protein S4; n=3; Borrelia... 37 0.24
UniRef50_Q2JFE9 Cluster: 30S ribosomal protein S4; n=25; Bacteri... 37 0.32
UniRef50_Q06SJ3 Cluster: Chloroplast 30S ribosomal protein S4; n... 37 0.32
UniRef50_O22029 Cluster: Chloroplast 30S ribosomal protein S4; n... 37 0.32
UniRef50_P46743 Cluster: Mitochondrial ribosomal protein S4; n=1... 36 0.43
UniRef50_Q92BB2 Cluster: 30S ribosomal protein S4; n=35; Bacteri... 36 0.43
UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033... 36 0.56
UniRef50_A6YGA2 Cluster: Ribosomal protein S4; n=30; cellular or... 35 1.3
UniRef50_Q8IKM0 Cluster: Ribosomal protein S4, putative; n=1; Pl... 35 1.3
UniRef50_A7RWV6 Cluster: Predicted protein; n=1; Nematostella ve... 34 1.7
UniRef50_Q4P328 Cluster: Helicase SWR1; n=1; Ustilago maydis|Rep... 34 1.7
UniRef50_Q9Z5U7 Cluster: 30S ribosomal protein S4; n=5; Alphapro... 34 1.7
UniRef50_UPI0000084740 Cluster: lethal (2) 35Bb CG31834-PA; n=1;... 34 2.3
UniRef50_Q5KLM6 Cluster: Nam9 protein, mitochondrial, putative; ... 33 4.0
UniRef50_Q4SBP2 Cluster: Chromosome 18 SCAF14665, whole genome s... 33 5.2
UniRef50_A2XYL0 Cluster: Putative uncharacterized protein; n=2; ... 33 5.2
UniRef50_Q5GW70 Cluster: Putative uncharacterized protein; n=1; ... 32 6.9
UniRef50_A4EAB5 Cluster: Putative uncharacterized protein; n=1; ... 32 9.2
UniRef50_A1VAB9 Cluster: DegT/DnrJ/EryC1/StrS aminotransferase; ... 32 9.2
UniRef50_A6YEB5 Cluster: Ribosomal protein S4; n=1; Chlorokybus ... 32 9.2
UniRef50_Q584A6 Cluster: Putative uncharacterized protein; n=1; ... 32 9.2
UniRef50_A0CR93 Cluster: Chromosome undetermined scaffold_25, wh... 32 9.2
UniRef50_A6RBE4 Cluster: Predicted protein; n=1; Ajellomyces cap... 32 9.2
UniRef50_Q86UK0 Cluster: ATP-binding cassette sub-family A membe... 32 9.2
>UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181;
Eukaryota|Rep: 40S ribosomal protein S9 - Homo sapiens
(Human)
Length = 194
Score = 291 bits (713), Expect = 9e-78
Identities = 140/154 (90%), Positives = 149/154 (96%)
Frame = +3
Query: 45 VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 224
V KTYVTPRRPFEK+RLDQELK+IGEYGLRNKREVWRVK+TLA+IRKAARELLTL+EKD
Sbjct: 8 VCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKD 67
Query: 225 PKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHAR 404
P+RLFEGNALLRRLVRIGVLDE +MKLDY+LGLKIEDFLERRLQTQVFK GLAKSIHHAR
Sbjct: 68 PRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHAR 127
Query: 405 ILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSL 506
+LIRQRHIRVRKQVVNIPSFIVRLDS KHIDFSL
Sbjct: 128 VLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSL 161
>UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeba
histolytica|Rep: 40S ribosomal protein S9 - Entamoeba
histolytica
Length = 185
Score = 173 bits (420), Expect = 3e-42
Identities = 83/153 (54%), Positives = 113/153 (73%)
Frame = +3
Query: 51 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 230
S TY TP+ P+E+ R D ELK++G++GL+NK+E+ RV Y L +R A+ +L + KDPK
Sbjct: 9 SITYKTPKVPYERERFDAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAKDPK 68
Query: 231 RLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARIL 410
RL EG ALLRRL +G+L Q KL++VL LK E+ LERRLQT V++ G AKSIHHAR+L
Sbjct: 69 RLLEGAALLRRLHNLGILPRDQNKLEFVLALKEENLLERRLQTLVYRKGFAKSIHHARVL 128
Query: 411 IRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLN 509
IR + I+V KQVV++PSF+VR++S I + N
Sbjct: 129 IRGKMIKVGKQVVDVPSFLVRVESEPLIQLADN 161
>UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5;
Oryza sativa|Rep: 40S ribosomal protein S9, putative -
Oryza sativa subsp. japonica (Rice)
Length = 157
Score = 145 bits (352), Expect = 5e-34
Identities = 74/127 (58%), Positives = 91/127 (71%)
Frame = +3
Query: 48 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 227
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV+ ELLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRVQ-----------ELLTLDEKNP 58
Query: 228 KRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 407
+R+FEG ALLR + R G+L E Q KLDYVL L +E+FL+ RLQT VFK G KSIHH +
Sbjct: 59 RRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKSIHHDHV 118
Query: 408 LIRQRHI 428
LIRQ HI
Sbjct: 119 LIRQHHI 125
>UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S9 -
Encephalitozoon cuniculi
Length = 184
Score = 126 bits (305), Expect = 2e-28
Identities = 71/160 (44%), Positives = 107/160 (66%), Gaps = 9/160 (5%)
Frame = +3
Query: 51 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 230
SK TPR PFEK RL +E +++G YGL+NK E+W ++ A+ ++ AR LLT +P+
Sbjct: 7 SKRASTPRDPFEKERLIREAQLVGVYGLKNKHELWVMEKIFAKDKERARILLT--STNPE 64
Query: 231 RL-FEGNALLRRLVRIGVL------DEKQMK--LDYVLGLKIEDFLERRLQTQVFKAGLA 383
+ G +LLRRL++ G+L D++++ L+ VL L I +LERRLQ +VF AGLA
Sbjct: 65 DIPINGRSLLRRLMKYGILGGIDLCDKQEVVNGLNKVLDLTINHYLERRLQFRVFAAGLA 124
Query: 384 KSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFS 503
KS+HHAR+LI R I ++ Q+V++P F+VR D I+++
Sbjct: 125 KSVHHARLLIGGRCISIKDQIVDVPGFMVRADKEPLIEYN 164
>UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella
natans|Rep: Ribosomal protein S9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 180
Score = 122 bits (293), Expect = 7e-27
Identities = 60/154 (38%), Positives = 97/154 (62%)
Frame = +3
Query: 48 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 227
+SK + P+ P+EK RL E+++I +GL+NKRE+WR ++ L+++RK A +L+ + K
Sbjct: 10 YSKIWNRPKNPYEKLRLCNEIRMINLFGLKNKRELWRTQFFLSKLRKVAEKLIYKKAKLE 69
Query: 228 KRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 407
K + +L + ++ L+ ++ + + L RRLQT V + L+K+IH ARI
Sbjct: 70 KIPSQSYGILWFCYKYNFMNNMTFCLESIIKIDLRSILSRRLQTVVKQLKLSKTIHEARI 129
Query: 408 LIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLN 509
LI +HI+V+ Q+VN PSF+VR D+ I FSLN
Sbjct: 130 LIMHKHIQVKNQIVNKPSFLVRKDNEIFISFSLN 163
>UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000501C59 UniRef100 entry -
Rattus norvegicus
Length = 199
Score = 118 bits (283), Expect = 1e-25
Identities = 69/125 (55%), Positives = 84/125 (67%), Gaps = 7/125 (5%)
Frame = +3
Query: 147 EVWRVKYTLARIRKAARELLTL-EEKDPKRLFEGNALLRRLVRIGVLDEKQMK------L 305
EVWRVK+TL +IRKA ELL L EKDP+ LFE N LLR+LV G+L E +MK
Sbjct: 41 EVWRVKFTLTKIRKAFWELLLLLNEKDPRYLFEDNLLLRQLVHTGLLGEGKMKPRRSWFT 100
Query: 306 DYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSG 485
+ GL+I F E++LQTQVF+ L KSI HA +L+ HIR+ KQVV+I F V LDS
Sbjct: 101 SWAFGLRIY-FSEKQLQTQVFELVLDKSIRHACVLLCHCHIRIGKQVVDIAFFFVGLDSR 159
Query: 486 KHIDF 500
KH DF
Sbjct: 160 KHTDF 164
>UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S4 -
Methanoregula boonei (strain 6A8)
Length = 185
Score = 118 bits (283), Expect = 1e-25
Identities = 64/147 (43%), Positives = 92/147 (62%), Gaps = 3/147 (2%)
Frame = +3
Query: 39 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL-E 215
P K+Y TP+RPFEK R+++E +++ EYGLRNKREVW+ + L + RKAARELL L
Sbjct: 4 PGKNHKSYQTPKRPFEKTRIEEETRLVIEYGLRNKREVWKAQSHLRKYRKAARELLALMS 63
Query: 216 EKDPKRLFEG--NALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 389
+ +FE + L+ + R G+L +D VL LK+ LERRLQT V++ GLA+S
Sbjct: 64 SATNQTVFEAKKSELISHMQRAGLLG-PDADIDNVLALKVPAQLERRLQTLVYRKGLARS 122
Query: 390 IHHARILIRQRHIRVRKQVVNIPSFIV 470
AR L+ HI + + V +P ++V
Sbjct: 123 PKQARQLVTHGHIAIGGRRVTVPGYLV 149
>UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2;
Methanomicrobiales|Rep: 30S ribosomal protein S4P -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 181
Score = 116 bits (280), Expect = 2e-25
Identities = 64/158 (40%), Positives = 94/158 (59%), Gaps = 3/158 (1%)
Frame = +3
Query: 39 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 218
P K Y TP+RPFE +R+++E +++ EYGLRNKREVW K L + RKAARE++ L+
Sbjct: 4 PGKNHKQYQTPKRPFELSRIEEETRLVIEYGLRNKREVWIAKGALRKYRKAAREIIALQS 63
Query: 219 KDPKRL---FEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 389
++ + + L+ L R G+L E +D VL LK+E L+RRLQTQV++ G A+S
Sbjct: 64 TGSEQARVERKKDELIGSLQRSGMLSE-NADIDDVLALKVEQQLDRRLQTQVYRRGFARS 122
Query: 390 IHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFS 503
AR I HI + + V IP + V + I ++
Sbjct: 123 PKQARQFITHGHIAIGGRRVTIPGYTVSAKEQEEISYA 160
>UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12;
Archaea|Rep: 30S ribosomal protein S4P - Methanococcus
jannaschii
Length = 187
Score = 115 bits (277), Expect = 6e-25
Identities = 62/154 (40%), Positives = 92/154 (59%)
Frame = +3
Query: 48 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 227
F KTY TP P+ K R+++E ++ +YGLR KREVW+ + L + R+ AR L++ ++
Sbjct: 8 FKKTYETPNHPWIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRLIS--DRTE 65
Query: 228 KRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 407
+ E L L + G+L + LD VL L +ED LERRLQT VF+ GLA++ AR
Sbjct: 66 QGAKEAVQLFNVLKKYGILKIENPTLDDVLSLTVEDILERRLQTLVFRKGLARTPRQARQ 125
Query: 408 LIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLN 509
LI HI V +VV PS++V ++ I ++ N
Sbjct: 126 LIVHGHIAVNGRVVTAPSYMVTVEEEDKISYAKN 159
>UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Thermoplasma
volcanium
Length = 200
Score = 111 bits (268), Expect = 7e-24
Identities = 64/145 (44%), Positives = 85/145 (58%), Gaps = 1/145 (0%)
Frame = +3
Query: 39 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAREL-LTLE 215
P K Y TPR P+EK R+D+E KI+ +YGL+NKRE+WR + L+ IR AR L L
Sbjct: 4 PKFHHKKYSTPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYLRARLR 63
Query: 216 EKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIH 395
D + +++RL R +L +K LD VL L +E+ L+RRLQT VFK LA S
Sbjct: 64 ASDANAQKQLERMIKRLSRYKILSDK-ATLDDVLSLTVENILDRRLQTIVFKKNLALSEK 122
Query: 396 HARILIRQRHIRVRKQVVNIPSFIV 470
AR LI HI V + V +P +V
Sbjct: 123 QARQLITHGHITVNGRRVTVPGMLV 147
>UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2;
Sulfolobaceae|Rep: 30S ribosomal protein S4P -
Sulfolobus tokodaii
Length = 177
Score = 109 bits (261), Expect = 5e-23
Identities = 59/154 (38%), Positives = 90/154 (58%)
Frame = +3
Query: 39 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 218
P + + P P+ + L++E +IG+YGLRNKRE+W + + + R AR LL L
Sbjct: 4 PKKSRRKWEGPGHPWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLALPP 63
Query: 219 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 398
+ R L+++L R+G++++ LD +LGL E++LERRLQT V+K GLA++I+
Sbjct: 64 AE--RSTREKQLIQKLYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQ 121
Query: 399 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 500
AR LI HI + + V P +IV IDF
Sbjct: 122 ARQLIVHGHIAIGGRRVTSPGYIVMRGEEDLIDF 155
>UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S4P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 219
Score = 107 bits (256), Expect = 2e-22
Identities = 58/161 (36%), Positives = 90/161 (55%), Gaps = 7/161 (4%)
Frame = +3
Query: 39 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL-- 212
P SK+Y TPR P+++AR+ E++++ YGLRNK+EVW+ L R AR+LL
Sbjct: 4 PGKKSKSYETPRHPWQEARMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAQVA 63
Query: 213 -----EEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAG 377
E + + +L +L+R G++ + +D +L LK E+ LERRLQTQV + G
Sbjct: 64 SGGQEGELEGHYATQSEEILSKLIRYGII-KADANVDDILSLKTENILERRLQTQVLRLG 122
Query: 378 LAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 500
LA+++ AR I HI + + IP +V + HI +
Sbjct: 123 LARTVIQARQFITHGHIAINGRKATIPGMLVSKEDEMHIGY 163
>UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S4P -
Pyrobaculum aerophilum
Length = 159
Score = 106 bits (254), Expect = 4e-22
Identities = 57/136 (41%), Positives = 85/136 (62%), Gaps = 2/136 (1%)
Frame = +3
Query: 69 PRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL--TLEEKDPKRLFE 242
P++ + K L +EL+++GEYGLRNK+E+W + L I + AR LL T EE+ P +
Sbjct: 16 PKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAPLEM-- 73
Query: 243 GNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQR 422
+L ++G +++ ++LD +L L + LERRLQT V++ GLAKSIHHAR LI
Sbjct: 74 --PFKEKLYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLIVHG 131
Query: 423 HIRVRKQVVNIPSFIV 470
H+ V + V P F+V
Sbjct: 132 HVAVAGRRVTSPGFLV 147
>UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultured
methanogenic archaeon RC-I|Rep: 30S ribosomal protein
S4P - Uncultured methanogenic archaeon RC-I
Length = 205
Score = 105 bits (252), Expect = 6e-22
Identities = 54/149 (36%), Positives = 87/149 (58%), Gaps = 5/149 (3%)
Frame = +3
Query: 39 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 218
P K Y TP P++KAR+D+E ++ +YGLRNK+ VW+ L + R AR LL +
Sbjct: 4 PGQAKKLYDTPNHPWQKARIDEETSLVKKYGLRNKKSVWKHASDLRKYRSNARALLGVMS 63
Query: 219 -----KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLA 383
+D + + ++++L +G+L E KL+ VL LK++D +ERRLQT +++ G A
Sbjct: 64 AGNLPEDSHYIRDAQNIVKKLQTLGILKE-DAKLEDVLALKVDDIMERRLQTIIYRKGFA 122
Query: 384 KSIHHARILIRQRHIRVRKQVVNIPSFIV 470
SI AR I HI + + + +P ++V
Sbjct: 123 NSIKQARQFIVHGHISLNGRKITVPGYLV 151
>UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcus
aeolicus Nankai-3|Rep: Ribosomal protein S4 -
Methanococcus aeolicus Nankai-3
Length = 177
Score = 103 bits (248), Expect = 2e-21
Identities = 60/157 (38%), Positives = 87/157 (55%)
Frame = +3
Query: 39 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 218
P SKTY TP P+ R+ QE ++ +YGL NK+E+W+++ L R+ AR+L++
Sbjct: 4 PRRLSKTYDTPNHPWIGERIKQERELSNKYGLSNKKEIWKMETRLRTFRRQARKLISDTS 63
Query: 219 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 398
++ E L L R G+L ++ LD VL L +E LERRLQT VF+ GLA +
Sbjct: 64 AQGEK--EAVQLFGILNRYGILLKEDATLDDVLSLNLESILERRLQTLVFRKGLANTPKQ 121
Query: 399 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLN 509
AR I HI V + +N PS++V L I + N
Sbjct: 122 ARQFIVHGHIAVNGKKINAPSYLVPLVEEDAISYMPN 158
>UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S4P -
Halobacterium salinarium (Halobacterium halobium)
Length = 170
Score = 99 bits (238), Expect = 3e-20
Identities = 56/155 (36%), Positives = 84/155 (54%)
Frame = +3
Query: 36 VPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLE 215
+P +K Y TP P++ R+ +E ++ YGL+NK E+WR + L R+ AR LL
Sbjct: 3 LPGENTKFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL--- 59
Query: 216 EKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIH 395
G + RL RIG+L E++ +LD VL L++ D LERRLQT V++ GLA ++
Sbjct: 60 --GQTGTVSGEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMG 116
Query: 396 HARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 500
AR + H+ V V PS+ V + + F
Sbjct: 117 QARQFVSHGHVTVDGSRVTEPSYTVPVSEENTLAF 151
>UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 182
Score = 99.5 bits (237), Expect = 4e-20
Identities = 53/149 (35%), Positives = 85/149 (57%)
Frame = +3
Query: 54 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 233
K Y TP P+ R+ +E ++ +YGL+NK+E+W+ + + R R+ AR +L ++ + R
Sbjct: 9 KQYDTPSHPWNADRIKEENRLANKYGLKNKKEIWKAESRVKRYRRDARIILGMDIDE--R 66
Query: 234 LFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILI 413
+ LL LVR G + KL+ VL L +ED L RRLQ+ VFK GL+ + AR+ +
Sbjct: 67 ADKEKELLDHLVRAGFISPNA-KLEEVLDLNVEDILRRRLQSLVFKRGLSHTAKEARLFV 125
Query: 414 RQRHIRVRKQVVNIPSFIVRLDSGKHIDF 500
HI + + +N P +V ++IDF
Sbjct: 126 VHGHITLNGKKINAPGHLVEKADEENIDF 154
>UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Nanoarchaeum
equitans
Length = 180
Score = 98.7 bits (235), Expect = 7e-20
Identities = 57/145 (39%), Positives = 88/145 (60%), Gaps = 1/145 (0%)
Frame = +3
Query: 69 PRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGN 248
P P++K RL E +++ EYGL+NKRE+W + T+AR +A L ++ + + E
Sbjct: 11 PSHPWQKQRLIIEKRLMKEYGLKNKRELW-IAETIARKWRAYARYLNAKQAAGQDISEEK 69
Query: 249 A-LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRH 425
L +L ++GVL E +LD VL L ++D LERRLQT + + GLAK++ AR I H
Sbjct: 70 ERFLTKLKKLGVLSENA-ELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIVHGH 128
Query: 426 IRVRKQVVNIPSFIVRLDSGKHIDF 500
I V +VV+ PS++V+ + I+F
Sbjct: 129 IMVNGEVVDAPSYLVKKEEEDKIEF 153
>UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3;
Thermoprotei|Rep: 30S ribosomal protein S4P -
Cenarchaeum symbiosum
Length = 205
Score = 94.7 bits (225), Expect = 1e-18
Identities = 56/147 (38%), Positives = 84/147 (57%)
Frame = +3
Query: 39 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 218
P + + + P+RPF +EL+ +G +GLR KRE+W+ L+R+R AR LL L +
Sbjct: 4 PKLPRRMWRKPKRPFNYDLKMEELRTLGTFGLRTKRELWKAHTELSRVRNQARSLLALGQ 63
Query: 219 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 398
+ +R + LLR L RIG++ K LD VL L++ D L RRLQT V K + +
Sbjct: 64 EVRER--KEPVLLRSLARIGLVG-KDASLDDVLNLQVNDLLGRRLQTIVMKKLGFSTPYQ 120
Query: 399 ARILIRQRHIRVRKQVVNIPSFIVRLD 479
AR + HI + +VV IPS+ V ++
Sbjct: 121 ARQAVVHGHITISDRVVTIPSYTVYVE 147
>UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep:
Similarity - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 246
Score = 85.4 bits (202), Expect = 7e-16
Identities = 52/149 (34%), Positives = 83/149 (55%)
Frame = -1
Query: 500 EVNVLARVQAHNK*WDVHNLLADTNMPLPDQNSGMMDGLRQASFEHLRLQTTLQEVLNLQ 321
EVNVL R Q+ ++ WDV +LL ++N+ L DQ+S +++ L Q L LQ++ QE+ NLQ
Sbjct: 34 EVNVLLRFQSDHERWDVDDLLTNSNVSLGDQDSSVVNRLGQTQLVDLGLQSSFQEIFNLQ 93
Query: 320 TKHIIEFHLFFIQYSNTNQTT*KGITFEQXXXXXXXXXXXXXXXXXXXXERVFDAPYFTL 141
++ II+ L F Q +N++Q++ + ITFEQ + ++ F+L
Sbjct: 94 SQDIIQLLLVFRQDTNSHQSSDQSITFEQSLWVLFVSGQQISGGSSDLRQLERNSVNFSL 153
Query: 140 VAETVLSDDLQLLVKTCLFKRTTRCHVRL 54
V +TV + LQ V+T F R+ V L
Sbjct: 154 VLQTVFTSQLQFGVQTSGFVRSLWSRVSL 182
>UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1;
uncultured euryarchaeote ARMAN-2|Rep: Ribosomal protein
small subunit S9 - uncultured euryarchaeote ARMAN-2
Length = 187
Score = 85.0 bits (201), Expect = 9e-16
Identities = 51/139 (36%), Positives = 78/139 (56%)
Frame = +3
Query: 54 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 233
+ Y P+ + AR+ + +I EYGL N E+W+V+ ++R+R R LL+
Sbjct: 9 RKYDKPKDIWNLARIKADNALIAEYGLANMHELWKVQSEISRLRGNVRVLLSGSSSHDT- 67
Query: 234 LFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILI 413
+ ++ R+V+ G+L E L+ VL + FLERRLQT VFK GLA++I AR LI
Sbjct: 68 ---SDKIIARMVKFGIL-ENGATLEKVLDITPNAFLERRLQTVVFKKGLARTIKQARQLI 123
Query: 414 RQRHIRVRKQVVNIPSFIV 470
I V + V+IP ++V
Sbjct: 124 THGFIAVNMKRVSIPGYMV 142
>UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n=1;
Encephalitozoon cuniculi|Rep: U3 SMALL NUCLEOLAR
RIBONUCLEOPROTEIN - Encephalitozoon cuniculi
Length = 180
Score = 60.9 bits (141), Expect = 2e-08
Identities = 37/118 (31%), Positives = 58/118 (49%)
Frame = +3
Query: 117 IGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQ 296
I +YGLR++ E + + ++RK A L L+E DP R L+ RL +GV+ K
Sbjct: 32 IAKYGLRDREEYTKYSRIVGKVRKLAEALARLKESDPVRTTITKKLVGRLYSVGVI--KN 89
Query: 297 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 470
KL + + F ERRL + + + S A + H+R+ +VV PS I+
Sbjct: 90 RKLVDCTKVTVSSFCERRLPMVMKRIRMVPSFKDATRFVEHGHVRLGSKVVYDPSTII 147
>UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3;
Eutheria|Rep: Ribosomal subunit protein S9 - Trichechus
manatus latirostris
Length = 30
Score = 59.7 bits (138), Expect = 4e-08
Identities = 26/30 (86%), Positives = 30/30 (100%)
Frame = +3
Query: 150 VWRVKYTLARIRKAARELLTLEEKDPKRLF 239
VWRVK+TLA+IRKAARELLTL+EKDP+RLF
Sbjct: 1 VWRVKFTLAKIRKAARELLTLDEKDPRRLF 30
>UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=13; Euteleostomi|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Homo sapiens (Human)
Length = 184
Score = 59.7 bits (138), Expect = 4e-08
Identities = 36/122 (29%), Positives = 61/122 (50%)
Frame = +3
Query: 105 ELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVL 284
EL+++ Y L+ + + R +R+ AR L L E+D R+ ALL +L +G++
Sbjct: 30 ELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDQFRVRASAALLDKLYALGLV 89
Query: 285 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 464
+ L+ + F RRL T + K +A+ + A + Q H+RV VV P+F
Sbjct: 90 PTRG-SLELCDFVTASSFCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAF 148
Query: 465 IV 470
+V
Sbjct: 149 LV 150
>UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 09 contig 1, DNA
sequence - Ostreococcus tauri
Length = 293
Score = 57.2 bits (132), Expect = 2e-07
Identities = 32/55 (58%), Positives = 34/55 (61%)
Frame = -2
Query: 499 KSMCLPESRRTINDGMFTTCLRTRICLCRIKILA*WMDFARPALNTCVCRRRSKK 335
KSMC S RT G FT CL TRI RIK A D ARP+L T VC+RRSKK
Sbjct: 64 KSMCFWLSVRTKKLGTFTICLPTRIWRWRIKTRAWCTDLARPSLKTSVCKRRSKK 118
Score = 34.7 bits (76), Expect = 1.3
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = -1
Query: 158 APYFTLVAETVLSDDLQLLVKTCLFKRTTRCHVRL 54
AP +LVA+ L+DDLQL V+ L +RT+R RL
Sbjct: 167 APQLSLVAKAELTDDLQLGVEAILLERTSRLLERL 201
>UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1;
Arabidopsis thaliana|Rep: Putative ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 106
Score = 54.4 bits (125), Expect = 2e-06
Identities = 25/36 (69%), Positives = 31/36 (86%)
Frame = +3
Query: 285 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 392
D ++ KLDYVL L +E+FLERRLQT VFK+G+AKSI
Sbjct: 17 DSEKNKLDYVLALTVENFLERRLQTIVFKSGMAKSI 52
>UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative; n=3;
Coelomata|Rep: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative - Aedes
aegypti (Yellowfever mosquito)
Length = 181
Score = 54.4 bits (125), Expect = 2e-06
Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 1/123 (0%)
Frame = +3
Query: 105 ELKIIGEYGLRNKREVWRVKYTLAR-IRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 281
E+KI+ Y ++ KRE + L+R IR+ ++ ++ K P R LL +L +G+
Sbjct: 29 EMKIMRRYNVQ-KREDYTTYNKLSRNIRELTNKIAEVDAKHPFRTEMSGLLLEKLYVLGL 87
Query: 282 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 461
+ K L+ + F RRL + + +++++ HA +I H+RV VV P+
Sbjct: 88 IPTK-WDLENASKISASSFCRRRLPVVLLRNKMSENLKHATQMIEHGHVRVGTDVVKDPA 146
Query: 462 FIV 470
F+V
Sbjct: 147 FLV 149
>UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=34; Eukaryota|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 183
Score = 54.0 bits (124), Expect = 2e-06
Identities = 32/123 (26%), Positives = 59/123 (47%)
Frame = +3
Query: 102 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 281
++ +++ Y ++N+ + + IR+ A +L L DP R LL +L +GV
Sbjct: 28 RDTQVMRTYHIQNREDYHKYNRICGDIRRLANKLSLLPPTDPFRRKHEQLLLDKLYAMGV 87
Query: 282 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 461
L K D + + RRL + + +A++I A I Q H+RV ++N P+
Sbjct: 88 LTTKSKISDLENKVTVSAICRRRLPVIMHRLKMAETIQDAVKFIEQGHVRVGPNLINDPA 147
Query: 462 FIV 470
++V
Sbjct: 148 YLV 150
>UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_186_71509_70955 - Giardia lamblia
ATCC 50803
Length = 184
Score = 51.6 bits (118), Expect = 1e-05
Identities = 34/118 (28%), Positives = 56/118 (47%)
Frame = +3
Query: 117 IGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQ 296
+ +YG+ ++RE+ + T+ +IR L L + + R+ L R L +GV+D Q
Sbjct: 32 MNKYGVYDRRELITYRQTMRKIRHMVELLTQLPQDNNVRIELTRRLSRILYDMGVVDNAQ 91
Query: 297 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 470
LD + L L RRL + K + + I ++Q H+RV VV P+ V
Sbjct: 92 ASLDDISKLNSSALLLRRLPCIMMKLKMVQKIQDGVRFVKQGHVRVGPNVVVNPALHV 149
>UniRef50_Q54XG2 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 177
Score = 49.6 bits (113), Expect = 4e-05
Identities = 29/123 (23%), Positives = 60/123 (48%)
Frame = +3
Query: 102 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 281
++++ IG +GL+ K E +A+ + +E+ L ++DP + + L +L +GV
Sbjct: 29 KDVENIGRFGLKGKEEYAEYTKLVAQYKHVLKEISDLSDQDPVKQKLLSDLSEKLYNMGV 88
Query: 282 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 461
+D KQ ++ + F RR + K A+ + A L+ H+R+ + + P+
Sbjct: 89 IDLKQP--SELVKVNASSFCRRRAVVMLVKKKFAEHLTQAFGLLSHGHVRIGPETIQDPA 146
Query: 462 FIV 470
I+
Sbjct: 147 LII 149
>UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3;
Betaproteobacteria|Rep: 30S ribosomal protein S4 B -
Nitrosomonas europaea
Length = 205
Score = 49.6 bits (113), Expect = 4e-05
Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Frame = +3
Query: 204 LTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLA 383
+ L+EK R G L R +R +L+ + K G + LERRL VF+AG A
Sbjct: 51 IKLQEKQKLRFNYG--LSERQLRHLMLNAR--KSTEPTGETLLQLLERRLDNVVFRAGFA 106
Query: 384 KSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF---SLNL 512
++ AR L+ RH+R+ + VNIPS +RL+ G I SLNL
Sbjct: 107 PTVIAARQLVSHRHVRLNGKPVNIPS--IRLNVGDEITIKPESLNL 150
>UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1;
Reclinomonas americana|Rep: Mitochondrial ribosomal
protein S4 - Reclinomonas americana
Length = 249
Score = 49.2 bits (112), Expect = 6e-05
Identities = 27/88 (30%), Positives = 45/88 (51%)
Frame = +3
Query: 210 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 389
L+EK R F N ++ V K +G + LERRL +++AG S
Sbjct: 91 LKEKQKLRKFYANVTEKQFYNYYV---KAKSFKGKIGDNLIKMLERRLDIIIYRAGFVNS 147
Query: 390 IHHARILIRQRHIRVRKQVVNIPSFIVR 473
I+ AR+L+ +H+ V ++ NI S++V+
Sbjct: 148 IYQARLLVNHKHVLVNNKIQNISSYLVQ 175
>UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=1;
Chlorobium phaeobacteroides BS1|Rep: Ribosomal protein
S4:RNA-binding S4 - Chlorobium phaeobacteroides BS1
Length = 134
Score = 48.8 bits (111), Expect = 7e-05
Identities = 32/96 (33%), Positives = 49/96 (51%)
Frame = +3
Query: 177 RIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQ 356
R RK + + L+EK + G +L R R + + K + G + F+E RL
Sbjct: 41 RRRKQSEYGIQLQEKQKAKYTYG--ILERQFR-NIFHQASRKKG-ITGENLLKFIEARLD 96
Query: 357 TQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 464
V++ G+A + AR L+ RHI V Q+VN+PSF
Sbjct: 97 NTVYRLGIAPTRSGARQLVSHRHITVNGQIVNVPSF 132
>UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3-like protein; n=1; Babesia bovis|Rep: U3
small nucleolar ribonucleoprotein protein IMP3-like
protein - Babesia bovis
Length = 195
Score = 48.8 bits (111), Expect = 7e-05
Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 11/145 (7%)
Frame = +3
Query: 102 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 281
+E KI+ Y +++ E + + RI K EL L E D R+ + L+ +L +
Sbjct: 27 RETKILRRYYIQDPEEYHKYNKLVGRITKLVSELRKLPEDDSFRIKMTDNLMEKLYVFKM 86
Query: 282 ----LDEKQMKLDYVLG-------LKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 428
L QM L V G L F RRL T + + + + A I Q HI
Sbjct: 87 MYIALSRYQMGLISVRGNLELCERLSASVFCRRRLATVLVQRKFCEHLKQAVTYIEQGHI 146
Query: 429 RVRKQVVNIPSFIVRLDSGKHIDFS 503
RV VVNIP++ V + HI ++
Sbjct: 147 RVGLDVVNIPAYHVTRELEDHITWA 171
>UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6;
Bacteria|Rep: 30S ribosomal protein S4 - Fusobacterium
nucleatum subsp. nucleatum
Length = 195
Score = 48.4 bits (110), Expect = 1e-04
Identities = 33/97 (34%), Positives = 51/97 (52%)
Frame = +3
Query: 186 KAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQV 365
K E T + K F N + ++ +I +E KL V GL + ++LERRL+ V
Sbjct: 38 KKPTEYATQLREKQKAKFIYNVMEKQFRKI--YEEAARKLG-VTGLTLIEYLERRLENVV 94
Query: 366 FKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 476
++ G AK+ AR ++ HI V + VNI SF V++
Sbjct: 95 YRLGFAKTRRQARQIVSHGHIAVNGRRVNIASFRVKV 131
>UniRef50_UPI0000E4A461 Cluster: PREDICTED: similar to MGC69249
protein; n=2; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to MGC69249 protein -
Strongylocentrotus purpuratus
Length = 145
Score = 48.0 bits (109), Expect = 1e-04
Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
Frame = +3
Query: 159 VKYT-LAR-IRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIE 332
+KY L+R +R A ++ L+ KDP R + +L++L +G++ KQ L +
Sbjct: 1 MKYNKLSRHVRTLANKIKQLDSKDPFRNQCTSQMLKKLYNMGIVPTKQ-NLALCDNVSAS 59
Query: 333 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 470
F RRL + K +A+++ A ++ HIRV ++V P+F+V
Sbjct: 60 SFCRRRLPVVMVKIKMAETVESAVKFVQHGHIRVGPELVLDPAFLV 105
>UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2;
Ruminococcus|Rep: Putative uncharacterized protein -
Ruminococcus torques ATCC 27756
Length = 181
Score = 47.2 bits (107), Expect = 2e-04
Identities = 31/97 (31%), Positives = 50/97 (51%)
Frame = +3
Query: 183 RKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQ 362
RK + L L EK + G +L + R KQM + + G + LE RL
Sbjct: 21 RKMSEYGLQLREKQKAKFIYG--VLEKPFRNYYAKAKQM--EGMTGENLMRILESRLDNV 76
Query: 363 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 473
+F+ GLA++ AR ++ +H+ V + VNIPS++V+
Sbjct: 77 IFRMGLARTRKEARQIVDHKHVLVNGKQVNIPSYLVK 113
>UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 187
Score = 47.2 bits (107), Expect = 2e-04
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = +3
Query: 48 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 206
+ KT+ R + K LD ELK IG Y LR KRE+W V+ +LA ++K L+
Sbjct: 119 YGKTFKESRSSYGKGFLDAELKFIGGYELRCKRELWSVQMSLAALQKYFSSLM 171
>UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37;
Bacteria|Rep: 30S ribosomal protein S4 - Desulfotalea
psychrophila
Length = 210
Score = 46.8 bits (106), Expect = 3e-04
Identities = 34/99 (34%), Positives = 49/99 (49%)
Frame = +3
Query: 174 ARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRL 353
AR +K + + L EK + G +L R+ EK V G + LERRL
Sbjct: 46 ARFKKVSDYAVQLREKQKVKSMYG--VLEAQFRLTF--EKAEAQKGVAGENLLILLERRL 101
Query: 354 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 470
VF+AG A S AR ++R +HI + + V+IPS+ V
Sbjct: 102 DNAVFRAGFASSRTQARQIVRHKHILINGKRVDIPSYQV 140
>UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1;
Bdellovibrio bacteriovorus|Rep: 30S ribosomal protein S4
B - Bdellovibrio bacteriovorus
Length = 208
Score = 45.6 bits (103), Expect = 7e-04
Identities = 46/139 (33%), Positives = 67/139 (48%), Gaps = 2/139 (1%)
Frame = +3
Query: 66 TPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEG 245
TPR ++ RL EL +G+ G +R ++ L R RK + L LEEK R G
Sbjct: 7 TPRFKRQR-RLLTELPGMGKAGALERRPYPPGQHGLQR-RKYSEFALQLEEKQKLRFHYG 64
Query: 246 --NALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQ 419
RRL+ +K ++V L + LE+RL VF+ G A SI AR L+
Sbjct: 65 LREEQFRRLINKA---KKSKATNWVEALV--NLLEKRLDNVVFRLGFASSIPAARQLVSH 119
Query: 420 RHIRVRKQVVNIPSFIVRL 476
+ V + VNI S I+++
Sbjct: 120 GKVLVNGKKVNIGSQIIKV 138
>UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n=2;
Chlorophyceae|Rep: Chloroplast 30S ribosomal protein S4
- Chlamydomonas reinhardtii
Length = 257
Score = 45.6 bits (103), Expect = 7e-04
Identities = 25/61 (40%), Positives = 34/61 (55%)
Frame = +3
Query: 291 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 470
K K+ G + FLE RL VF+ +A +I AR LI HIRV + VNIPS++
Sbjct: 92 KAKKIKESTGQVLLQFLEMRLDNIVFRLNMAPTIPAARQLISHGHIRVNNKKVNIPSYMC 151
Query: 471 R 473
+
Sbjct: 152 K 152
>UniRef50_UPI0000498936 Cluster: U3 small nucleolar
ribonucleoprotein subunit; n=2; Entamoeba histolytica
HM-1:IMSS|Rep: U3 small nucleolar ribonucleoprotein
subunit - Entamoeba histolytica HM-1:IMSS
Length = 186
Score = 44.8 bits (101), Expect = 0.001
Identities = 30/119 (25%), Positives = 54/119 (45%)
Frame = +3
Query: 114 IIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEK 293
I+ + + ++ E + + +RK + L L + D R+ + RL +GV+
Sbjct: 32 IMARFHIHDESEFEAYEKAVLNLRKLSFLLQKLPKDDAFRMVLTKRICDRLYDLGVIILP 91
Query: 294 QMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 470
+ L + + DF RRL V + + A LI+Q HI+V V+ P++IV
Sbjct: 92 EKGLHMIDVIHASDFCRRRLAIVVKAKKMVTDVTQAETLIQQGHIKVGPDVIRNPAYIV 150
>UniRef50_A5USG3 Cluster: Ribosomal protein S4; n=4;
Chloroflexaceae|Rep: Ribosomal protein S4 - Roseiflexus
sp. RS-1
Length = 206
Score = 44.4 bits (100), Expect = 0.002
Identities = 36/101 (35%), Positives = 48/101 (47%)
Frame = +3
Query: 174 ARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRL 353
AR R+ + L L EK R G L R+ RI EK + G + LERRL
Sbjct: 41 ARRRQVSDYGLQLLEKQKARYVYG-VLERQFRRIF---EKAQRFPGETGAYLFILLERRL 96
Query: 354 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 476
V++ G A + AR L+ HI V + NIPS+ VR+
Sbjct: 97 DNVVYRLGFATTRAQARQLVSHGHITVNGRKTNIPSYTVRV 137
>UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1;
Calycularia crispula|Rep: Small ribosomal protein 4 -
Calycularia crispula
Length = 197
Score = 44.4 bits (100), Expect = 0.002
Identities = 30/94 (31%), Positives = 48/94 (51%)
Frame = +3
Query: 183 RKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQ 362
RK ++ + LEEK R G + L + + + + VL L++ LE RL
Sbjct: 35 RKISQYRIRLEEKQKLRFHYGLTERQLLKYVRIARKAKGSTGQVL-LQL---LEMRLDNT 90
Query: 363 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 464
+F+ G+A +I AR L+ RHI + V+IPS+
Sbjct: 91 IFRLGMASTIPGARQLVSHRHILINNDAVDIPSY 124
>UniRef50_A2E3D0 Cluster: S4 domain containing protein; n=1;
Trichomonas vaginalis G3|Rep: S4 domain containing
protein - Trichomonas vaginalis G3
Length = 182
Score = 44.0 bits (99), Expect = 0.002
Identities = 28/131 (21%), Positives = 61/131 (46%)
Frame = +3
Query: 111 KIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDE 290
+++G Y L N E + + +I++ L + +D R+ + R+ ++G+++
Sbjct: 31 QVVGIYCLDNSEEYHQYNRLVGKIQRFTNTLRQMGPEDKVRIDLTKQFVDRVYKLGIIET 90
Query: 291 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 470
Q L + + +RRL + + I A L+RQ H+R+ VV P+ +V
Sbjct: 91 PQ--LSECEKINVVAICKRRLPVIMVNLKFCQRISEADKLVRQGHVRIGPDVVTNPATLV 148
Query: 471 RLDSGKHIDFS 503
+ +I+++
Sbjct: 149 SKEMEDYINWA 159
>UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole
genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr14 scaffold_211, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 276
Score = 43.6 bits (98), Expect = 0.003
Identities = 29/112 (25%), Positives = 52/112 (46%)
Frame = +3
Query: 174 ARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRL 353
+R K ++ + LEEK R G + L + + K + +G + LE L
Sbjct: 157 SRSGKRSQYRIRLEEKQKLRFHYGLTERQLLNYVHIA----RKAKWAIGRVLLQLLEMHL 212
Query: 354 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLN 509
+F+ G+A +I AR L+ RHI V ++V+IP + ++ + +N
Sbjct: 213 DNILFRLGMASTILGARQLVNHRHILVNGRIVDIPRLVNQIIDSNWVGLKIN 264
>UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;
n=4; Bilateria|Rep: Putative 40S ribosomal protein
S4-like - Caenorhabditis elegans
Length = 183
Score = 43.2 bits (97), Expect = 0.004
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Frame = +3
Query: 141 KREVWRVKYTLA-RIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVL 317
KRE + + TLA + R+ A + L E DP R +L + G++ L+ +
Sbjct: 40 KREHYALYNTLAAKSREVADLIKNLSESDPFRSKCTEDMLTKFYAAGLVPTSDT-LERIG 98
Query: 318 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 482
+ F RRL + G+ +S+ A L+ Q H+R+ ++V P+F+V S
Sbjct: 99 KVTGASFARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSS 153
>UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellular
organisms|Rep: 30S ribosomal protein S4 - Synechococcus
sp. (strain JA-3-3Ab) (Cyanobacteria
bacteriumYellowstone A-Prime)
Length = 203
Score = 42.7 bits (96), Expect = 0.005
Identities = 33/97 (34%), Positives = 48/97 (49%)
Frame = +3
Query: 174 ARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRL 353
A +K + + LEEK RL G + R+++R K + GL + LE RL
Sbjct: 39 AERKKKSEYAIRLEEKQKVRLNYGVSE-RQMLRYM---RKARRSKGSTGLALLQMLEMRL 94
Query: 354 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 464
VF+ G+A +I AR L+ HI V + V IPS+
Sbjct: 95 DCIVFRLGMAPTIPAARQLVSHGHIEVNGRKVTIPSY 131
>UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19;
Bacteria|Rep: 30S ribosomal protein S4 - Chlorobium
tepidum
Length = 203
Score = 42.7 bits (96), Expect = 0.005
Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Frame = +3
Query: 312 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKH 491
V G + LERRL V++ G + S AR L+ H+ V + VNIPSF+V G
Sbjct: 82 VTGDNLVKMLERRLDNVVYRCGFSPSRAGARQLVTHGHMLVNGKKVNIPSFLV--SPGDQ 139
Query: 492 IDF---SLNLHSV 521
I+F S NL +V
Sbjct: 140 IEFRQKSRNLDAV 152
>UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17;
Bacteria|Rep: 30S ribosomal protein S4 - Aquifex
aeolicus
Length = 211
Score = 42.3 bits (95), Expect = 0.006
Identities = 20/51 (39%), Positives = 30/51 (58%)
Frame = +3
Query: 318 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 470
G + +LERRL V++ G A + AR L+ H+ V + VNIPS++V
Sbjct: 89 GEMLLQYLERRLDNVVYRLGFASTRRQARQLVAHGHVLVNGKKVNIPSYLV 139
>UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2;
Eukaryota|Rep: Plastid 30S ribosomal protein S4 -
Astasia longa (Euglenophycean alga)
Length = 206
Score = 42.3 bits (95), Expect = 0.006
Identities = 26/59 (44%), Positives = 34/59 (57%)
Frame = +3
Query: 288 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 464
+K +KL G + LE RL V++ GLA +I +R LI HI V +VVNIPSF
Sbjct: 74 KKAIKLKGSSGENLLVALEMRLDNIVYRLGLAPTIISSRQLINHGHIYVDGKVVNIPSF 132
>UniRef50_A6DLN6 Cluster: 30S ribosomal protein S4; n=1;
Lentisphaera araneosa HTCC2155|Rep: 30S ribosomal
protein S4 - Lentisphaera araneosa HTCC2155
Length = 205
Score = 41.5 bits (93), Expect = 0.011
Identities = 23/62 (37%), Positives = 33/62 (53%)
Frame = +3
Query: 288 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 467
++ KL V G + LE RL V++ G A + AR L+ HIR+ + NIPS+
Sbjct: 77 DRAAKLSGVTGNNLMVLLEARLDNVVYRLGFAPTRSAARQLVGHGHIRINGRRCNIPSYS 136
Query: 468 VR 473
VR
Sbjct: 137 VR 138
>UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10;
Coniferales|Rep: Small ribosomal protein 4 - Podocarpus
latifolius
Length = 222
Score = 41.5 bits (93), Expect = 0.011
Identities = 31/93 (33%), Positives = 48/93 (51%)
Frame = +3
Query: 186 KAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQV 365
K +R + LEEK R G + L + + + VL L++ LE RL +
Sbjct: 26 KKSRYRIRLEEKQKVRFHYGLTDRQLLQYVRIARRAKGSTGQVL-LQL---LEMRLDNIL 81
Query: 366 FKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 464
F+ G+A +I AR L+ RHI V ++V+IPS+
Sbjct: 82 FRLGMALTIPGARQLVNHRHILVNGRMVDIPSY 114
>UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13;
Clostridiaceae|Rep: 30S ribosomal protein S4 B -
Clostridium perfringens (strain ATCC 13124 / NCTC 8237 /
Type A)
Length = 197
Score = 41.5 bits (93), Expect = 0.011
Identities = 22/52 (42%), Positives = 29/52 (55%)
Frame = +3
Query: 339 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHI 494
LE RL V++ G A SI AR ++ H V + VNIPSF RL+ G +
Sbjct: 86 LESRLDNMVYRMGFASSIRQARQMVNHGHFLVNGKKVNIPSF--RLNIGDEV 135
>UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellular
organisms|Rep: 30S ribosomal protein S4 - Lactobacillus
johnsonii
Length = 203
Score = 41.1 bits (92), Expect = 0.015
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = +3
Query: 318 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHI- 494
G+ LERRL V++ GLA + AR L+ HI V + V+IPS+ V++ +
Sbjct: 84 GVNFMALLERRLDNIVYRLGLASTREQARQLVNHGHILVDGKRVDIPSYEVKVGQEISLR 143
Query: 495 DFSLNLHSV 521
D S NL V
Sbjct: 144 DKSKNLQQV 152
>UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;
Filicales|Rep: Ribosomal protein small subunit 4 -
Asplenium trichomanes subsp. inexpectans
Length = 169
Score = 40.7 bits (91), Expect = 0.020
Identities = 23/61 (37%), Positives = 32/61 (52%)
Frame = +3
Query: 282 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 461
L+ KQ + G LE RL +F G+A +I AR L+ RHI V +V+IPS
Sbjct: 35 LEAKQRRTRGSTGQVPLQLLEMRLDNVLFHLGMASTIPAARQLVNHRHILVNNCIVDIPS 94
Query: 462 F 464
+
Sbjct: 95 Y 95
>UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa
(japonica cultivar-group)|Rep: Os07g0628300 protein -
Oryza sativa subsp. japonica (Rice)
Length = 94
Score = 40.7 bits (91), Expect = 0.020
Identities = 19/25 (76%), Positives = 22/25 (88%)
Frame = +3
Query: 432 VRKQVVNIPSFIVRLDSGKHIDFSL 506
V +Q+VNIPSFIVRL+S KHI FSL
Sbjct: 27 VGRQLVNIPSFIVRLESEKHIAFSL 51
>UniRef50_Q9XPI8 Cluster: Ribosomal protein S4; n=2; Dictyostelium
discoideum|Rep: Ribosomal protein S4 - Dictyostelium
discoideum (Slime mold)
Length = 300
Score = 40.7 bits (91), Expect = 0.020
Identities = 38/160 (23%), Positives = 81/160 (50%), Gaps = 8/160 (5%)
Frame = +3
Query: 21 MVNNRVPSVFSKTYVTPRRPFEK-ARLDQELKIIGEYGLRNKREVWRVKYTLA-RIRKAA 194
+++N+V + ++ Y P +P +K + DQ+LK Y + + + + + + +I +
Sbjct: 34 IISNKVFLLKNELY--PLQPKKKRGKRDQQLKTT--YTKKKLKRILSLLFRIGGKIYRKK 89
Query: 195 RELLTLEEKDPKRLFEGNALLRRLVRIGVLDEK--QMKLDY--VLGLK--IEDFLERRLQ 356
+ + K + F N L RL R L+ K Q KL Y G + I LE+R+
Sbjct: 90 IKKKKINLKKQQEPFTQNLTLHRLFRKFYLNLKLKQFKLLYKKYKGNEKVIIQQLEKRVD 149
Query: 357 TQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 476
+ ++G +S++ AR +I +H+ V ++ ++P +++ +
Sbjct: 150 MVLLRSGFVRSLYEARQIINHKHLLVNGKIASLPGYMINV 189
>UniRef50_A4EA85 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 198
Score = 40.3 bits (90), Expect = 0.026
Identities = 36/117 (30%), Positives = 55/117 (47%)
Frame = +3
Query: 123 EYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMK 302
E G +K+E R R RK + + L EK + G +L + G + K K
Sbjct: 21 ELGYSSKKESIRQP---KRRRKESEYGMQLREKQKVKFIYG--VLEKQFH-GYFN-KARK 73
Query: 303 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 473
++ V G + LE RL VF+ G A++ AR +R H V + V+IPS+ V+
Sbjct: 74 MNGVTGENLMIILESRLDNVVFRLGFARTRKEARQSVRHGHFTVNGKRVDIPSYRVK 130
>UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1;
Algoriphagus sp. PR1|Rep: 30S ribosomal protein S4 -
Algoriphagus sp. PR1
Length = 201
Score = 40.3 bits (90), Expect = 0.026
Identities = 18/54 (33%), Positives = 32/54 (59%)
Frame = +3
Query: 312 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 473
+ G + LE RL V++ G++ + AR L+ +HI V ++VNIPS+ ++
Sbjct: 81 ITGENLLQLLEARLDNTVYRMGISPTRRGARQLVSHKHILVNGELVNIPSYSLK 134
>UniRef50_Q382E4 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3, putative; n=6; Trypanosomatidae|Rep: U3
small nucleolar ribonucleoprotein protein IMP3, putative
- Trypanosoma brucei
Length = 226
Score = 40.3 bits (90), Expect = 0.026
Identities = 31/121 (25%), Positives = 56/121 (46%)
Frame = +3
Query: 117 IGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQ 296
I +Y L ++ + R + IR+ L L R+ +L +L +G+++EK
Sbjct: 79 ITKYHLEDREDYRRYLRLVGLIRQLLTHLRYLPADSKIRIQITQQILDKLYAMGLINEK- 137
Query: 297 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 476
+ L V + +E F +RRL T + +A + A + H+RV + P+F+V
Sbjct: 138 LGLAEVDKVGVEVFCKRRLPTVLRDLNMAPNCKIAADFVHHGHVRVGTSQIRDPAFLVPR 197
Query: 477 D 479
D
Sbjct: 198 D 198
>UniRef50_Q9G884 Cluster: Ribosomal protein S4; n=1; Malawimonas
jakobiformis|Rep: Ribosomal protein S4 - Malawimonas
jakobiformis
Length = 225
Score = 39.9 bits (89), Expect = 0.035
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +3
Query: 333 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 476
+ LERRL T +F+ A S +AR LI HI + +VN+ S +V +
Sbjct: 107 NLLERRLDTILFRINWASSFFNARQLINHGHILINGNIVNVSSHLVNI 154
>UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2;
Cystobacterineae|Rep: 30S ribosomal protein S4 B -
Myxococcus xanthus (strain DK 1622)
Length = 210
Score = 39.9 bits (89), Expect = 0.035
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +3
Query: 318 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 497
G + LE RL + V +AGLA SI AR +R ++ V + +IPSF R+ G +
Sbjct: 89 GTVLLQLLESRLDSLVLRAGLATSIRQARQFVRHGYLHVDGKRADIPSF--RVKPGSEVR 146
Query: 498 F 500
F
Sbjct: 147 F 147
>UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4;
n=1123; Embryophyta|Rep: Chloroplast 30S ribosomal
protein S4 - Arabidopsis thaliana (Mouse-ear cress)
Length = 201
Score = 39.9 bits (89), Expect = 0.035
Identities = 30/97 (30%), Positives = 50/97 (51%)
Frame = +3
Query: 174 ARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRL 353
+R K ++ + LEEK R G + L + + + + VL L++ LE RL
Sbjct: 36 SRSVKKSQYRIRLEEKQKLRFHYGLTEHQLLKYVRIAGKAKGSTGQVL-LQL---LEMRL 91
Query: 354 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 464
+F+ G+A +I AR L+ HI V ++V+IPS+
Sbjct: 92 DNILFRLGMALTIPQARQLVNHGHILVNGRIVDIPSY 128
>UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=1;
Toxoplasma gondii|Rep: Apicoplast 30S ribosomal protein
S4 - Toxoplasma gondii
Length = 198
Score = 39.1 bits (87), Expect = 0.060
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Frame = +3
Query: 282 LDEKQMK--LDYVLGLKIEDFL---ERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQV 446
L E Q+K Y+ LKI + + E RL +F+ G AKSI+ AR LI I + +
Sbjct: 59 LKENQIKKYFKYIKLLKIFNLIQIIELRLDATIFRLGFAKSINQARQLITHGFIFINSIL 118
Query: 447 VNIPSFIV 470
V PSFI+
Sbjct: 119 VKKPSFIL 126
>UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8;
Rickettsiales|Rep: 30S ribosomal protein S4 -
Neorickettsia sennetsu (strain Miyayama)
Length = 205
Score = 37.9 bits (84), Expect = 0.14
Identities = 16/45 (35%), Positives = 30/45 (66%)
Frame = +3
Query: 339 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 473
LE R+ + ++++G+ +I AR LI +H+ V ++VNI SF ++
Sbjct: 91 LESRVSSVLYRSGMVPTIFAARQLISHKHVTVNGEIVNICSFTLK 135
>UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20;
Actinobacteria (class)|Rep: 30S ribosomal protein S4 -
Arthrobacter sp. (strain FB24)
Length = 208
Score = 37.9 bits (84), Expect = 0.14
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +3
Query: 288 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 467
E+ + + G + + LE RL V +AG A++I AR L+ RHI V V+ PSF
Sbjct: 76 EEARRTKGLTGENLIELLEMRLDALVLRAGFARTIAQARQLVVHRHILVDGIRVDRPSFR 135
Query: 468 V 470
V
Sbjct: 136 V 136
>UniRef50_Q06J34 Cluster: Chloroplast 30S ribosomal protein S4; n=1;
Bigelowiella natans|Rep: Chloroplast 30S ribosomal
protein S4 - Bigelowiella natans (Pedinomonas
minutissima) (Chlorarachnion sp.(strain CCMP 621))
Length = 194
Score = 37.9 bits (84), Expect = 0.14
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +3
Query: 318 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 464
G K+ LE RL T +++ G ++ AR LI HI V + V+IP F
Sbjct: 75 GDKLLQLLEMRLDTLLYRTGFVPTVASARQLISHGHINVNGKKVDIPGF 123
>UniRef50_Q01688 Cluster: Putative 40S ribosomal protein S4-like;
n=21; Eukaryota|Rep: Putative 40S ribosomal protein
S4-like - Pneumocystis carinii
Length = 169
Score = 37.5 bits (83), Expect = 0.18
Identities = 24/123 (19%), Positives = 52/123 (42%)
Frame = +3
Query: 102 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 281
+++ +I Y + + + ++ + + A +L LE D LL +L + +
Sbjct: 28 RDVNVIRRYHIPQREDYFKYNQLVGLLLGIANKLSLLEPTDSFGNLHKKMLLGKLFDMAL 87
Query: 282 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 461
L D L + F RRL + + + +++ + + H+RV +V+ P+
Sbjct: 88 LTSTPKLSDVENKLTVSAFCRRRLPVVMCRLKMCETVSTSVKYVEHGHVRVGPEVITDPA 147
Query: 462 FIV 470
F V
Sbjct: 148 FFV 150
>UniRef50_Q5LNM2 Cluster: 30S ribosomal protein S4; n=86;
Bacteria|Rep: 30S ribosomal protein S4 - Silicibacter
pomeroyi
Length = 206
Score = 37.5 bits (83), Expect = 0.18
Identities = 31/112 (27%), Positives = 54/112 (48%)
Frame = +3
Query: 138 NKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVL 317
N+RE ++ R K + L L K + + G+ ++ RI + +++K D
Sbjct: 28 NRREYGPGQHGQRRKGKMSDFGLQLRAKQKLKGYYGDLTEKQFRRI-YGEAERVKGD--T 84
Query: 318 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 473
G + LERRL V++A ++ AR + H+ V + VNIPS+ V+
Sbjct: 85 GENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGHVLVNGKRVNIPSYRVK 136
>UniRef50_Q7NAV0 Cluster: 30S ribosomal protein S4; n=11;
Mollicutes|Rep: 30S ribosomal protein S4 - Mycoplasma
gallisepticum
Length = 207
Score = 37.5 bits (83), Expect = 0.18
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +3
Query: 300 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLD 479
K+ +L + + LE RL VF+ G A + AR L+ H+ V + +IPS ++ L
Sbjct: 82 KMSGILTMNLFRTLESRLDNLVFRMGFAPTRRGARQLVSHGHVLVNGKTFDIPSALISLG 141
Query: 480 S 482
S
Sbjct: 142 S 142
>UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14;
Bacteria|Rep: 30S ribosomal protein S4 - Thermotoga
maritima
Length = 209
Score = 37.1 bits (82), Expect = 0.24
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +3
Query: 339 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 473
LE RL V++ G A + AR L+ H V + VNIPS+++R
Sbjct: 96 LEARLDNVVYRMGFAINRRQARQLVNHGHFLVNGKKVNIPSYLLR 140
>UniRef50_O51560 Cluster: 30S ribosomal protein S4; n=3; Borrelia
burgdorferi group|Rep: 30S ribosomal protein S4 -
Borrelia burgdorferi (Lyme disease spirochete)
Length = 209
Score = 37.1 bits (82), Expect = 0.24
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = +3
Query: 312 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 473
V G + LERR+ V++AG A S HAR ++ I + + V IPS I+R
Sbjct: 85 VTGDNLLSILERRIDNVVYRAGFAISRAHARQIVSHGIIILNGRRVTIPSIILR 138
>UniRef50_Q2JFE9 Cluster: 30S ribosomal protein S4; n=25;
Bacteria|Rep: 30S ribosomal protein S4 - Frankia sp.
(strain CcI3)
Length = 209
Score = 36.7 bits (81), Expect = 0.32
Identities = 24/85 (28%), Positives = 43/85 (50%)
Frame = +3
Query: 210 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 389
L++++ ++ +L + R G DE + G ++ LE RL V++ G A S
Sbjct: 55 LQKREKQKCARIYGVLEKQFR-GYYDEANRRAGKT-GDELLKILESRLDNVVYRGGFAPS 112
Query: 390 IHHARILIRQRHIRVRKQVVNIPSF 464
AR +R H++V + V+IPS+
Sbjct: 113 RDAARQAVRHGHVQVNGRKVDIPSY 137
>UniRef50_Q06SJ3 Cluster: Chloroplast 30S ribosomal protein S4; n=1;
Stigeoclonium helveticum|Rep: Chloroplast 30S ribosomal
protein S4 - Stigeoclonium helveticum (Green alga)
Length = 2922
Score = 36.7 bits (81), Expect = 0.32
Identities = 27/69 (39%), Positives = 37/69 (53%)
Frame = +3
Query: 258 RRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVR 437
R+LVR V K++K G + LE RL VF+ +A +I AR LI HI +
Sbjct: 85 RQLVRY-VQQAKKIKGS--TGRVLLRLLEMRLDNIVFRLHMAPTIKAARQLISHGHILIN 141
Query: 438 KQVVNIPSF 464
K+ V IPS+
Sbjct: 142 KKKVTIPSY 150
>UniRef50_O22029 Cluster: Chloroplast 30S ribosomal protein S4; n=3;
Cyanidiaceae|Rep: Chloroplast 30S ribosomal protein S4 -
Cyanidium caldarium
Length = 192
Score = 36.7 bits (81), Expect = 0.32
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Frame = +3
Query: 177 RIRKAARELLTLEEKDPKRLFEG--NALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERR 350
+ RK + + L+EK + + G N+ L R R ++ K GL + LE R
Sbjct: 39 KTRKLSEFAVQLQEKQKLQYYYGITNSQLARYFR----QARRSKSS--TGLALLTMLETR 92
Query: 351 LQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 464
L V++AG A ++ AR L+ H++V + V I S+
Sbjct: 93 LDHLVYRAGFAPTLPAARQLVNHGHVKVNGKKVTIASW 130
>UniRef50_P46743 Cluster: Mitochondrial ribosomal protein S4; n=1;
Prototheca wickerhamii|Rep: Mitochondrial ribosomal
protein S4 - Prototheca wickerhamii
Length = 511
Score = 36.3 bits (80), Expect = 0.43
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +3
Query: 339 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLNLHS 518
+E+RL ++++G K+I AR R I V +V IPS I L+SG I + L S
Sbjct: 200 IEKRLDVVLYRSGFTKTIVAARQACRHSQIYVNSKVCRIPSTI--LESGDIISYKNQLDS 257
Query: 519 V 521
+
Sbjct: 258 L 258
>UniRef50_Q92BB2 Cluster: 30S ribosomal protein S4; n=35;
Bacteria|Rep: 30S ribosomal protein S4 - Listeria
innocua
Length = 200
Score = 36.3 bits (80), Expect = 0.43
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = +3
Query: 339 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 470
LE+RL V++ GLA++ AR L+ HI V + V+IPS+ V
Sbjct: 90 LEQRLDNIVYRLGLARTRRAARQLVNHGHITVDGKRVDIPSYQV 133
>UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033C;
n=1; Saccharomyces cerevisiae|Rep: Putative
uncharacterized protein YKR033C - Saccharomyces
cerevisiae (Baker's yeast)
Length = 141
Score = 35.9 bits (79), Expect = 0.56
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -3
Query: 453 CSQLACGHEYAFAGSKFWHDGWTSPGQL*TPASAD 349
CS L H +FWH GW+SP Q TPA+A+
Sbjct: 90 CSSLL--HRGVLTVKQFWHVGWSSPSQSSTPAAAE 122
>UniRef50_A6YGA2 Cluster: Ribosomal protein S4; n=30; cellular
organisms|Rep: Ribosomal protein S4 - Leptosira
terrestris (Pleurastrum terrestre)
Length = 221
Score = 34.7 bits (76), Expect = 1.3
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +3
Query: 318 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 464
G + LE RL VF+ G+A +I AR L+ HI V + V+I S+
Sbjct: 94 GETLLQLLEMRLDNIVFRLGMAPTIPAARQLVNHGHIVVNNKKVDISSY 142
>UniRef50_Q8IKM0 Cluster: Ribosomal protein S4, putative; n=1;
Plasmodium falciparum 3D7|Rep: Ribosomal protein S4,
putative - Plasmodium falciparum (isolate 3D7)
Length = 159
Score = 34.7 bits (76), Expect = 1.3
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +3
Query: 321 LKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 500
+ + F RRL +F+ ++I A I+ +IR+ V+N PSF + + HI +
Sbjct: 75 ITVSSFCRRRLAVLLFRLKFVQTIKLAITYIQHGNIRIGNNVINNPSFHINRNMEDHIKW 134
Query: 501 S 503
+
Sbjct: 135 A 135
>UniRef50_A7RWV6 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 739
Score = 34.3 bits (75), Expect = 1.7
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 380 GEVHPSCQNFDPAKAYSCPQASCEHPIIYCAP 475
G VHPSC + D + CP +CE P + C P
Sbjct: 136 GNVHPSCSDADGTSSSCCPPLTCE-PDMMCNP 166
>UniRef50_Q4P328 Cluster: Helicase SWR1; n=1; Ustilago maydis|Rep:
Helicase SWR1 - Ustilago maydis (Smut fungus)
Length = 1830
Score = 34.3 bits (75), Expect = 1.7
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +3
Query: 84 EKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRR 263
EK ++ L+ + ++ LR + WR+ + R RKAA E E+ D ++L NA+L +
Sbjct: 615 EKKAEERRLRALAKWTLREVLKQWRLAVNVVRARKAAAEKAEKEKSDKEQL---NAILEQ 671
>UniRef50_Q9Z5U7 Cluster: 30S ribosomal protein S4; n=5;
Alphaproteobacteria|Rep: 30S ribosomal protein S4 -
Zymomonas mobilis
Length = 204
Score = 34.3 bits (75), Expect = 1.7
Identities = 32/108 (29%), Positives = 49/108 (45%)
Frame = +3
Query: 138 NKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVL 317
N+RE ++ R K + L L+ K + + G+ ++ R D ++K D
Sbjct: 28 NRREYGPGQHGQRRRSKISDYGLQLKAKQKLKGYYGDVTEKQFRR-SYDDASKLKGD--T 84
Query: 318 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 461
+ LERRL V++A A +I AR L+ HIRV NI S
Sbjct: 85 SQNLIGILERRLDMIVYRAKFAPTIFAARQLVSHGHIRVNGVKCNIAS 132
>UniRef50_UPI0000084740 Cluster: lethal (2) 35Bb CG31834-PA; n=1;
Drosophila melanogaster|Rep: lethal (2) 35Bb CG31834-PA
- Drosophila melanogaster
Length = 291
Score = 33.9 bits (74), Expect = 2.3
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = +3
Query: 327 IEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGK 488
I DF RL TQ F+ KSIH++ +++ +KQ+ NIP FI R GK
Sbjct: 149 IADFGTARL-TQ-FRRTSTKSIHNSTASCQRQKEEKKKQIQNIPRFIPRKKKGK 200
>UniRef50_Q5KLM6 Cluster: Nam9 protein, mitochondrial, putative;
n=2; Filobasidiella neoformans|Rep: Nam9 protein,
mitochondrial, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 317
Score = 33.1 bits (72), Expect = 4.0
Identities = 13/44 (29%), Positives = 28/44 (63%)
Frame = +3
Query: 339 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 470
+ERRL +F++ A+++ AR + Q H+++ QV+ P+ ++
Sbjct: 140 IERRLDVLIFRSCFAQNVWEARRYVVQGHVKLNGQVMRNPNIML 183
>UniRef50_Q4SBP2 Cluster: Chromosome 18 SCAF14665, whole genome
shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 18
SCAF14665, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 785
Score = 32.7 bits (71), Expect = 5.2
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Frame = +3
Query: 255 LRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHAR--ILIRQRHI 428
++++V+I +L + K V G + + +R L L + + H R L ++
Sbjct: 385 MKKMVQIPMLRPWEAKNTKVFGASLSELQDRGLVEDGVPVLLRRLVEHLRKHALQQEGLF 444
Query: 429 RVRKQVVNIPSFIVRLDSGKHIDFS 503
RV V + + RL+SG+H+D S
Sbjct: 445 RVNGNVRAVGTLKQRLESGEHVDLS 469
>UniRef50_A2XYL0 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 157
Score = 32.7 bits (71), Expect = 5.2
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Frame = +3
Query: 210 LEEKDPKRLFEGNALL-RRLVRIGVLDEKQMKLDYVLGLKIEDFLE---RRLQTQVFKAG 377
L E+D + + G L+ ++LV I KQM ++ D L RRL T + K
Sbjct: 37 LVERDDYKKYNGICLMVQKLVNI----IKQMDPRDPYRAEMTDMLLDKLRRLATVMVKLK 92
Query: 378 LAKSIHHARILIRQRHIRVRKQVVNIPSFIV 470
A+ + A I+Q H+RV + V P+F+V
Sbjct: 93 FAEHLKEAVTYIQQGHVRVGPETVTDPAFLV 123
>UniRef50_Q5GW70 Cluster: Putative uncharacterized protein; n=1;
Xanthomonas oryzae pv. oryzae|Rep: Putative
uncharacterized protein - Xanthomonas oryzae pv. oryzae
Length = 223
Score = 32.3 bits (70), Expect = 6.9
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Frame = +3
Query: 225 PKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRL--QTQVFKAGLAKSIHH 398
P+ + + A + +VR GV D ++ + G F+ L +T++FKAG+A+S
Sbjct: 125 PQLIADAQAAVDEVVRRGVTDRARIAIG---GHSYGAFMTANLLARTRLFKAGIARSGMS 181
Query: 399 A---RILIRQRHIRVRKQVVNIPSFIVRLDSGKH 491
A R+L R R RKQ V + IV G H
Sbjct: 182 AIPRRLLCRPSVDRRRKQCVANATRIVASHIGAH 215
>UniRef50_A4EAB5 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 382
Score = 31.9 bits (69), Expect = 9.2
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Frame = +3
Query: 141 KREVWRVKYT---LARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDY 311
+R W+V A + R T+E KD + A + RLVRI D+K+ +
Sbjct: 162 QRRGWKVTINDCPAAEVIGIDRATFTVEGKDAFGMLRAEAGVHRLVRISPTDDKRRRQTT 221
Query: 312 VLGLKIEDFLERRLQTQVFKAGLAKSIHHA 401
G+++ L + ++ + ++HA
Sbjct: 222 FAGVEVIPVLPDDIDIEISPDDIRVDVYHA 251
>UniRef50_A1VAB9 Cluster: DegT/DnrJ/EryC1/StrS aminotransferase;
n=2; Desulfovibrio vulgaris subsp. vulgaris|Rep:
DegT/DnrJ/EryC1/StrS aminotransferase - Desulfovibrio
vulgaris subsp. vulgaris (strain DP4)
Length = 392
Score = 31.9 bits (69), Expect = 9.2
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +3
Query: 90 ARLDQELKIIGEYGLRNKREVWRVKYTLA 176
A L Q ++++ YG+ + RE+W+ +YT A
Sbjct: 203 ADLAQRMRVLSMYGISDAREIWQKRYTRA 231
>UniRef50_A6YEB5 Cluster: Ribosomal protein S4; n=1; Chlorokybus
atmophyticus|Rep: Ribosomal protein S4 - Chlorokybus
atmophyticus (Soil alga)
Length = 267
Score = 31.9 bits (69), Expect = 9.2
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 339 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 473
LERRL + + ++ AR LI + I V + VNI S++++
Sbjct: 94 LERRLDVVLLRLKYCSTLSEARQLISHKKILVNNETVNISSYLLK 138
>UniRef50_Q584A6 Cluster: Putative uncharacterized protein; n=1;
Trypanosoma brucei|Rep: Putative uncharacterized protein
- Trypanosoma brucei
Length = 426
Score = 31.9 bits (69), Expect = 9.2
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Frame = +3
Query: 198 ELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQM--KLDYVLGLKIEDFLERRLQTQVFK 371
E+L L E +P+++ E A L ++D QM K YV ++ +ERR T V
Sbjct: 37 EILRLAEGEPEKIMEEPANLT-----SIIDRLQMFVKATYVKDSLYKEAMERRKGT-VNN 90
Query: 372 AGLAK-SIHHARILIRQR 422
+G AK S+H A +IR R
Sbjct: 91 SGAAKMSMHRANDIIRWR 108
>UniRef50_A0CR93 Cluster: Chromosome undetermined scaffold_25, whole
genome shotgun sequence; n=2; Paramecium tetraurelia|Rep:
Chromosome undetermined scaffold_25, whole genome shotgun
sequence - Paramecium tetraurelia
Length = 1517
Score = 31.9 bits (69), Expect = 9.2
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Frame = +3
Query: 240 EGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRL-QTQVFKAGL-AKSIHHARILI 413
+GN+ L+RIG+LDE+ + + + + +ED + +L ++ F A K+ RI +
Sbjct: 930 KGNSRQANLIRIGLLDEENIHSEIIKKVSLEDLAQHKLFSSKKFNAEQDQKTTAELRIEL 989
Query: 414 RQRHIRVRK 440
Q V+K
Sbjct: 990 CQIQTHVKK 998
>UniRef50_A6RBE4 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 675
Score = 31.9 bits (69), Expect = 9.2
Identities = 22/57 (38%), Positives = 30/57 (52%)
Frame = +3
Query: 174 ARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLE 344
+R +K E L EE+ KR E N L R ++I L+EK K+ GL+ DF E
Sbjct: 325 SRKKKRQAERLKKEEEKKKRDAERNRL--RKLKIEQLEEKIEKIKAAAGLRTSDFSE 379
>UniRef50_Q86UK0 Cluster: ATP-binding cassette sub-family A member 12;
n=29; Fungi/Metazoa group|Rep: ATP-binding cassette
sub-family A member 12 - Homo sapiens (Human)
Length = 2595
Score = 31.9 bits (69), Expect = 9.2
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Frame = -3
Query: 243 LRTISWGPSPRG*GAHEQPYG----YERACI*RAILHACCGDRTLR*SSTLGQDVP---F 85
LRT W P P +H Q YG Y + I RAI+ G R + + Q +P F
Sbjct: 998 LRTKIWAPGPHNSPSHNQIYGRAFIYLQDSIERAIIELQTG-RNSQEIAVQVQAIPYPCF 1056
Query: 84 QKDDEVSRTSLKIPTVL 34
KD+ ++ S +P VL
Sbjct: 1057 MKDNFLTSVSYSLPIVL 1073
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 530,846,947
Number of Sequences: 1657284
Number of extensions: 10726643
Number of successful extensions: 31241
Number of sequences better than 10.0: 96
Number of HSP's better than 10.0 without gapping: 30286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31216
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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