Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312C04f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri...   244   2e-65
At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri...   244   4e-65
At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protei...    45   4e-05
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si...    29   2.5  
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi...    28   3.3  
At5g41310.1 68418.m05020 kinesin motor protein-related                 28   3.3  
At1g43730.1 68414.m05028 hypothetical protein                          28   3.3  
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim...    27   5.8  
At5g28615.1 68418.m03493 hypothetical protein                          27   5.8  
At4g32190.1 68417.m04581 centromeric protein-related low similar...    27   5.8  
At4g15880.1 68417.m02413 Ulp1 protease family protein contains P...    27   7.7  
At3g42730.1 68416.m04462 Ulp1 protease family protein contains P...    27   7.7  
At2g26860.2 68415.m03223 F-box family protein contains F-box dom...    27   7.7  
At1g60720.1 68414.m06835 hypothetical protein                          27   7.7  
At1g56020.1 68414.m06431 expressed protein                             27   7.7  

>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
           ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
          Length = 197

 Score =  244 bits (598), Expect = 2e-65
 Identities = 115/162 (70%), Positives = 140/162 (86%)
 Frame = +3

Query: 21  MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 200
           MVN R    + KT+  PRRP+EK RLD ELK++GEYGLR KRE+WRV+YTL+RIR AARE
Sbjct: 1   MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARE 60

Query: 201 LLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGL 380
           LLTL+EK+P+R+FEG ALLRR+ R G+LDE Q KLDYVL L +E+FLERRLQT VFK+G+
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGM 120

Query: 381 AKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSL 506
           AKSIHHAR+LIRQRHIRV +Q+VNIPSF+VR++S KH+DFSL
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSL 162


>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
           ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
          Length = 198

 Score =  244 bits (596), Expect = 4e-65
 Identities = 112/153 (73%), Positives = 136/153 (88%)
 Frame = +3

Query: 48  FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 227
           + KT+  PRRP+EK RLD ELK++GEYGLRNKRE+WRV+Y+L+RIR AAR+LLTL+EK P
Sbjct: 10  YGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSP 69

Query: 228 KRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 407
           +R+FEG ALLRR+ R G+LDE Q KLDYVL L +E+FLERRLQT VFK+G+AKSIHH+R+
Sbjct: 70  RRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRV 129

Query: 408 LIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSL 506
           LIRQRHIRV KQ+VNIPSF+VRLDS KHIDF+L
Sbjct: 130 LIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFAL 162


>At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protein
           40S RIBOSOMAL PROTEINs - different species
          Length = 182

 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 29/123 (23%), Positives = 56/123 (45%)
 Frame = +3

Query: 102 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 281
           +E +I   Y + ++ +  +       ++K    +  ++  DP R+   + LL +L  +GV
Sbjct: 27  RENEITYRYHMGSRDDYKKYSGLCRMVQKLTNIMKQMDPADPFRIQMTDMLLEKLYNMGV 86

Query: 282 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 461
           +  ++  L     L +  F  RRL T +     A+    A   I Q H+RV  + +  P+
Sbjct: 87  IPTRK-SLTLTERLSVSSFCRRRLSTVLVHLKFAEHHKEAVTYIEQGHVRVGPETITDPA 145

Query: 462 FIV 470
           F+V
Sbjct: 146 FLV 148


>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
           similar to chloroplast membrane protein (ALBINO3)
           (GI:3927828) [Arabidopsis thaliana]
          Length = 1013

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +3

Query: 54  KTYVTPRR-PFEKARLDQ-ELKIIGEYGLRNKREVWRVKYT 170
           K ++ PRR P  +    Q E K   EYG RN  E W +  T
Sbjct: 479 KYFIKPRRHPESECSATQTEYKFTSEYGKRNSSECWAMTTT 519


>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
           similarity to unknown protein (ref|NP_005638.1)
          Length = 613

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 293 TDETRLCAWSED*GLLGASSADAGVQSW 376
           T E   CAWS    LL + S DA  + W
Sbjct: 265 TSEVCACAWSPSASLLASGSGDATARIW 292


>At5g41310.1 68418.m05020 kinesin motor protein-related 
          Length = 961

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +1

Query: 355 RRRCSKLAWRSPSIMPEF*SGKGIFVSASKL*TSHHLL 468
           RRR S  A  S  +   F  G   F+ AS++ TSHH L
Sbjct: 141 RRRWSLPADHSKGVDSNFNDGGSQFIEASEINTSHHSL 178


>At1g43730.1 68414.m05028 hypothetical protein
          Length = 320

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 411 SKFWHDGWTSPGQL 370
           +KFWHD WT  G L
Sbjct: 77  AKFWHDNWTGHGPL 90


>At5g41240.1 68418.m05011 glutathione S-transferase, putative
           similar to glutathione S-transferase, GST 10b
           GB:CAA10662 [Arabidopsis thaliana] 37349.
          Length = 591

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 261 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQ 362
           RL  + VLDE++  +D  LG+K     ER++ T+
Sbjct: 473 RLENLWVLDEEEQVMDLPLGVKSSKQKERKVATK 506


>At5g28615.1 68418.m03493 hypothetical protein
          Length = 149

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 411 SKFWHDGWTSPGQL 370
           +KFWHD WT  G L
Sbjct: 9   AKFWHDDWTGLGPL 22


>At4g32190.1 68417.m04581 centromeric protein-related low similarity
           to SP|Q02224 Centromeric protein E (CENP-E protein)
           {Homo sapiens}
          Length = 783

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 123 EYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRL 266
           +YG+ NKR V  + +T   +R    E+L ++     +  E N ++ RL
Sbjct: 599 DYGMENKRLVMELSFTRENLRMKEMEVLAVQRALTFKDEEINVVMGRL 646


>At4g15880.1 68417.m02413 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; low similarity to
           sentrin/SUMO-specific protease [Homo sapiens]
           GI:6906859;  identical to cDNA hypothetical protein,
           partial (1189 bp) GI:2326349
          Length = 489

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 39  PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREV 152
           P    K    PR PF     D+E ++   +  RN+R+V
Sbjct: 242 PKTVEKRVEVPREPFIPLTEDEEAEVYRAFSGRNRRKV 279


>At3g42730.1 68416.m04462 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At3g24380, At5g36840,
           At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
           At1g27780, At5g36850, At1g52020, At3g24390, At4g05280,
           At1g25886, At4g03300
          Length = 1314

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +3

Query: 12  EAKMVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREV 152
           E+K+V      +  KT++ P  PF+  R + + K++G+       E+
Sbjct: 795 ESKLVTGMEVEIPEKTHIDPPSPFQVTR-ELDTKVVGDLAAATDVEI 840


>At2g26860.2 68415.m03223 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 355

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 24/87 (27%), Positives = 41/87 (47%)
 Frame = +3

Query: 216 EKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIH 395
           E+D +RLFE    ++RL    +LD +   + Y  G+         L   +++   +K + 
Sbjct: 260 EQDVERLFESITSVKRLSLFVLLDIEDESM-YHNGIYFNQL--EHLNLHIYRDNWSKLL- 315

Query: 396 HARILIRQRHIRVRKQVVNIPSFIVRL 476
             R+L     +RV K VV++  FI  L
Sbjct: 316 -VRLLEDSPKLRVLKIVVDVSFFIGNL 341


>At1g60720.1 68414.m06835 hypothetical protein
          Length = 289

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 405 FWHDGWTSPGQL 370
           FWHD WTS G L
Sbjct: 25  FWHDSWTSLGPL 36


>At1g56020.1 68414.m06431 expressed protein
          Length = 398

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = -3

Query: 441 ACGHEYAFAGSKFWHDGWTSPGQL*TPASADDAPRSPQSSDQAHNRVSSVFHPVLQYE 268
           AC      +  KF   GWTSP       + DD  RS     Q  + +  +  PV+ +E
Sbjct: 4   ACVKSAGVSPEKFSSYGWTSPRM---SLTRDDNRRSSSVDKQQSDPLPEIQDPVVDFE 58


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,433,612
Number of Sequences: 28952
Number of extensions: 235576
Number of successful extensions: 704
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)