Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312C02f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 29 0.42
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 1.3
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 27 1.3
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 26 3.0
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb... 26 3.9
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 25 6.8
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo... 25 6.8
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 25 9.0
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1... 25 9.0
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 29.1 bits (62), Expect = 0.42
Identities = 20/76 (26%), Positives = 37/76 (48%)
Frame = +1
Query: 271 DVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQ 450
D+ FD + H+ LI L + + +IR L N + T + + G PQ
Sbjct: 370 DIKACFDSIPHDKLIALLSSKIKDQRFIQLIRKAL-NAGYL-----TENRYKYDIVGTPQ 423
Query: 451 GSALSPLLFSLFINDI 498
GS +SP+L +++++ +
Sbjct: 424 GSIVSPILANIYLHQL 439
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.5 bits (58), Expect = 1.3
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +2
Query: 83 ANCTSVCSTNASETS-SHPRAFSSMNNSDSVQITHAYNRCTVSRSTFS*DLTDQNRST 253
A +S+ ST AS ++ S A SS+N++ S T + TVS ST LT N +T
Sbjct: 208 ATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSISSTVSSST---PLTSSNSTT 262
Score = 24.6 bits (51), Expect = 9.0
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +2
Query: 41 IQRVTAQLASSCLWANCTSVCSTNASETSSHPRAFSSMNNSDSVQITHAYN-RCTVSRST 217
+ T ASS ++ +S ST A+ TSS P + + + S T + T + S
Sbjct: 311 VNSTTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTSVNSTTATSA 370
Query: 218 FS*DLTDQNRST 253
S LT N ++
Sbjct: 371 SSTPLTSVNSTS 382
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 27.5 bits (58), Expect = 1.3
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 325 FNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGSALSP 468
FN+G+P S + + +R+ SSP+ LT+ +P GS +P
Sbjct: 170 FNIGIPSSNIDSSQFLPVSRAIAASEISPSSSPQLLTSFLPSGSVSNP 217
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +2
Query: 23 PVNQKIIQRVTAQLASSCLWANCTSVCSTNASETSSHPRAFSSMNNSDSV 172
P +Q + +S+ L ++CT + TN+ S+ +F M SD +
Sbjct: 575 PTSQGATSTTVSSASSNFLSSSCTPIDDTNSVTGSTLSCSFDEMKLSDKI 624
>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 657
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -3
Query: 105 EQTLVQF-AQRHEEANWAVTRWIIFWFTGFVYTDND 1
E T+V+ A+ ++A W R + WFT T+ D
Sbjct: 299 ESTMVETDAEFEDDAKWETMRKALQWFTQLSRTEQD 334
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 396 ISKRAVRQEVPYDEHETVRYAHVEKFENQTVV 301
++K+A+R YDEHE RY + VV
Sbjct: 7 LAKKAIRSLKNYDEHEN-RYGSIFSVSGPVVV 37
>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 739
Score = 25.0 bits (52), Expect = 6.8
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = -3
Query: 291 VERFCDVEEEGSRVDRFWSVKSYEN 217
+E +CD + + S D W+V+ + N
Sbjct: 499 IEMYCDPDPDPSNTDTQWNVEEHIN 523
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = -3
Query: 381 VRQEVPYDEHE-TVRYAHVEKFENQTVVPDFV 289
V P D H T H+E E + V PD V
Sbjct: 1094 VPNNAPTDAHNITSADGHIENIEQEVVFPDLV 1125
>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 24.6 bits (51), Expect = 9.0
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = -3
Query: 420 GGAGSFYSISKRAVRQEVPYDEHET---VRYAHVEKFENQTVVPDFVERFCDVEEEGSRV 250
GG + Y + ++P +E ++ +RY + +N + + E+F V+E G
Sbjct: 392 GGGNNTYGKDIPGLLSKMPQEEWDSYILMRYINAVPSQNYILKGERPEKFDVVDEIGILG 451
Query: 249 DRFWSVKSYENV 214
W++K+ E V
Sbjct: 452 TIVWNIKTDEVV 463
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,143,528
Number of Sequences: 5004
Number of extensions: 43175
Number of successful extensions: 120
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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