Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312C02f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 36 0.015
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 36 0.020
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 36 0.026
04_04_1248 - 32051679-32052356,32053617-32053778,32054147-320542... 31 0.74
04_03_0758 + 19322891-19323193,19323606-19323778,19324778-19326095 29 2.3
02_02_0604 - 12064451-12065683,12065729-12065827,12065858-120659... 29 2.3
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626... 29 3.0
04_03_0028 + 9698427-9698849,9698862-9699227 29 3.0
01_06_1766 + 39756155-39756973 29 3.0
01_06_1342 - 36438869-36439459,36439567-36439627,36440751-364411... 29 3.0
01_06_0226 - 27684093-27685091 29 3.0
12_02_1280 - 27517683-27517871,27517955-27518029,27518155-275183... 28 5.2
03_02_0467 + 8707777-8707892,8708030-8708096,8708190-8708260,870... 27 9.1
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 36.3 bits (80), Expect = 0.015
Identities = 45/167 (26%), Positives = 66/167 (39%)
Frame = +1
Query: 4 VIGIHKPGKPKNNPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRANHS 183
++ I KPGK +N YRPISL + V + I +D Q GF
Sbjct: 973 IVLIQKPGK-ENTVDGYRPISL-QNCSVKILSKVLATRLQRVFLRMIHLD-QTGFLKGR- 1028
Query: 184 CV*QVHRLTEHILVGLNRPKPIYTGALFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLII 363
C+ + ++ R K T + D KAFD V + L L G P++ + I
Sbjct: 1029 CISENLIYATELIQACYRRK-CQTIIVKLDFTKAFDSVIWSSLFKILAVRGFPENWISWI 1087
Query: 364 RDFLSNRSFRYRVEGTRSSPRPLTAGVPQGSALSPLLFSLFINDIPR 504
+ LS+ + G G+ QG LS LF L + + R
Sbjct: 1088 KGLLSSSKSAVLLNGVPGRWICCKKGLLQGDPLSSYLFILVADVLQR 1134
>07_03_1291 +
25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 35.9 bits (79), Expect = 0.020
Identities = 25/78 (32%), Positives = 33/78 (42%)
Frame = +1
Query: 271 DVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQ 450
D AKAFD V L L G PD+ + I++ L + G G+ Q
Sbjct: 42 DFAKAFDSVNWQSLFQILSVKGFPDNWISWIKNLLQTSKSAVLLHGIPGKWITCKKGLRQ 101
Query: 451 GSALSPLLFSLFINDIPR 504
G LSP LF L + + R
Sbjct: 102 GDPLSPYLFILVADVLQR 119
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 35.5 bits (78), Expect = 0.026
Identities = 23/74 (31%), Positives = 34/74 (45%)
Frame = +1
Query: 262 LFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAG 441
L D KAFD + H+ ++ + +MG P + ++ S S + G + G
Sbjct: 454 LKLDFEKAFDTIEHSAILSVMQHMGFPLKWIEWVQMVFSTASSAVLLNGVPGNSFKCRRG 513
Query: 442 VPQGSALSPLLFSL 483
V QG LS LLF L
Sbjct: 514 VRQGVPLSLLLFVL 527
>04_04_1248 -
32051679-32052356,32053617-32053778,32054147-32054269,
32054686-32054793
Length = 356
Score = 30.7 bits (66), Expect = 0.74
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -1
Query: 353 TRLSGTPMLKSLKIKPLCQTLSNAFATSKKRAPV*IGFGRLSP 225
T LS +P L L +KP A T+K V +G G LSP
Sbjct: 136 TNLSISPSLSLLHVKPRTSAKPTASTTAKNARRVGVGAGSLSP 178
>04_03_0758 + 19322891-19323193,19323606-19323778,19324778-19326095
Length = 597
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +3
Query: 54 PPN*PPHVSGQTVRASALQTPQR 122
PP P ++GQ RA A QTPQR
Sbjct: 537 PPPQQPELAGQAFRAPAPQTPQR 559
>02_02_0604 -
12064451-12065683,12065729-12065827,12065858-12065955,
12066782-12066924,12067233-12067729
Length = 689
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +1
Query: 391 RYRVEGTRSSPRPLTAGVPQGSALSPLLFSL 483
R + GT S P G+ QG LSPLLF L
Sbjct: 216 RIDINGTLSDPFKPMRGLRQGDPLSPLLFVL 246
>12_02_0973 + 24959440-24959451,24959962-24962195,24962539-24962653,
24963146-24963943,24964140-24964422,24964500-24964951,
24965744-24965870,24965950-24966074,24966188-24966858,
24966976-24967093,24967177-24967293,24967564-24967658,
24968152-24968303,24968858-24968913,24969001-24969218,
24969842-24970239,24970345-24970628,24970730-24970836,
24970882-24970968,24971729-24971990,24972228-24972503,
24973197-24973254,24973437-24973756,24973889-24973999,
24974183-24974350,24974494-24974622,24974731-24974820,
24974934-24975040,24975133-24975281,24975584-24975666,
24975749-24975844,24975957-24976079,24976180-24976263,
24976371-24976511,24976652-24976951,24977386-24977453,
24977540-24977642,24979363-24979524,24979613-24981230,
24981270-24981661,24981689-24981991,24982078-24982161,
24982296-24982448,24982678-24982841,24982915-24983062,
24983209-24983331,24983409-24983496,24983686-24983867
Length = 4177
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 324 FQHGRTGQSRAHHTGLLV*PLFSISSRRNP 413
+Q+G+ QS H+ GL PL +S NP
Sbjct: 3736 YQNGKLDQSSVHNYGLATSPLTGMSDSNNP 3765
>04_03_0028 + 9698427-9698849,9698862-9699227
Length = 262
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 335 PMLKSLKIKPLCQTLSNAFATSKKRAPV*I--GFGRLSP 225
P L++KPL Q L NAF K APV I F ++ P
Sbjct: 221 PPQPPLELKPLPQGLHNAFLHGDKEAPVVISTSFPKMKP 259
>01_06_1766 + 39756155-39756973
Length = 272
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = -1
Query: 443 TPAVSGRGEERVPSTRYRKERLDKKSRMMSTR 348
TPAV+G E+R + RKERL +K+ ++TR
Sbjct: 14 TPAVAG--EQRRAALEMRKERLVRKASSLATR 43
>01_06_1342 -
36438869-36439459,36439567-36439627,36440751-36441130,
36441955-36442761
Length = 612
Score = 28.7 bits (61), Expect = 3.0
Identities = 20/65 (30%), Positives = 28/65 (43%)
Frame = +3
Query: 66 PPHVSGQTVRASALQTPQRLRLIQGHSHR*TIRIPCKSLMRITGAPSHGAHSRRT*PTKT 245
P HV+G V A+A ++ + HS R +R P + P HG H P +
Sbjct: 37 PQHVAGAAVAAAAAAAGGQMYHVPQHSRREKLRFPPDA---GDSPPPHG-HGHGHAPQQQ 92
Query: 246 DLHGS 260
HGS
Sbjct: 93 QQHGS 97
>01_06_0226 - 27684093-27685091
Length = 332
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = -3
Query: 456 GALRDSSREWSRGGAGSFYSISKRAVRQEVPYDEHETVRYAHVEKFENQTV 304
G + S R+ GG G F +++ Y+ E + H E+ E Q +
Sbjct: 230 GGVSSSKRKRGGGGGGGFGELARAVETFAEMYERMEFAKQRHAEEMERQRI 280
>12_02_1280 -
27517683-27517871,27517955-27518029,27518155-27518318,
27518424-27518538,27518783-27519074,27519162-27519318,
27519438-27519510,27520309-27520377,27520471-27520694,
27520800-27520981,27521067-27522064,27522335-27522580
Length = 927
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -3
Query: 471 ERRESGA-LRDSSREWSRGGAGSFYSISKRAVRQEVPYDEHETVRYAH 331
+RRES +RD SRE R + S + ++R R + Y E + V H
Sbjct: 291 DRRESAHHIRDESRESERRSSSSRHKDNERRDRSKDRYKESDKVDSGH 338
>03_02_0467 +
8707777-8707892,8708030-8708096,8708190-8708260,
8708629-8708746,8708820-8708893,8709278-8709333,
8709448-8709531,8709611-8709698,8709786-8709863,
8710335-8710391,8710606-8711044
Length = 415
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 397 RVEGTRSSPRPLTAGVPQGSALSPLLFS 480
+V G+ S P PL VP ALSP +FS
Sbjct: 79 KVIGSWSFPCPLYQNVPLSLALSPRIFS 106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,595,106
Number of Sequences: 37544
Number of extensions: 306510
Number of successful extensions: 1024
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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