Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312C02f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g15250.1 68416.m01926 expressed protein ; expression supporte... 29 1.4
At5g12400.1 68418.m01458 PHD finger transcription factor, putati... 29 1.9
At2g03480.1 68415.m00307 dehydration-responsive protein-related ... 29 1.9
At5g05240.1 68418.m00560 expressed protein similar to unknown pr... 29 2.5
At3g63430.1 68416.m07142 expressed protein similarity to predict... 28 3.3
At5g42840.1 68418.m05221 DC1 domain-containing protein contains ... 27 5.8
At2g37840.2 68415.m04646 protein kinase family protein contains ... 27 5.8
At2g37840.1 68415.m04645 protein kinase family protein contains ... 27 5.8
At4g15720.1 68417.m02393 pentatricopeptide (PPR) repeat-containi... 27 7.7
>At3g15250.1 68416.m01926 expressed protein ; expression supported
by MPSS
Length = 217
Score = 29.5 bits (63), Expect = 1.4
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 8 SVYTNPVNQKIIQRVTAQLASSCLWANCTSVCSTNASETSSHPR-AFSSMNNSDS 169
S+YT ++ I T++ S C N +S +N S TS PR ++S+ N ++S
Sbjct: 57 SIYT----KRSISSTTSEYTSRCNSTNSSSSFGSNNSSTSQSPRTSYSTSNKNNS 107
>At5g12400.1 68418.m01458 PHD finger transcription factor, putative
similarity to predicted proteins, Arabidopsis thaliana
Length = 1595
Score = 29.1 bits (62), Expect = 1.9
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -3
Query: 357 EHETVRYAHVEKFENQTVVPDFVERF-CDVEEEGSRVDRFWSVKSY 223
E ETV+Y + F + +PD V + C VEE S RFW +S+
Sbjct: 1222 EEETVKY--LLDFGKRRNIPDVVSKNGCMVEESSSGRKRFWLNESH 1265
>At2g03480.1 68415.m00307 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase;
non-consensus GA donor site at exon 4
Length = 606
Score = 29.1 bits (62), Expect = 1.9
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = +2
Query: 2 SLSVYTNPVNQKIIQRVTAQLASSCLWANCT-SVCSTNASETSSHPRAFSSMNNSDSVQI 178
S+S N +++KI +TAQ + LW + S C ++ S+ S + DSV
Sbjct: 334 SISTRVNELSKKICWSLTAQQDETFLWQKTSDSSCYSSRSQAS-----IPLCKDGDSVPY 388
Query: 179 THAYNRCTVSRSTFS*DLTDQNRS 250
H C +S +T ++ QNRS
Sbjct: 389 YHPLVPC-ISGTTSKRWISIQNRS 411
>At5g05240.1 68418.m00560 expressed protein similar to unknown
protein (gb AAD32815.2)
Length = 530
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 56 AQLASSCLWANCTSVCSTNASETSSHPRAFSSMNNSD 166
A SSCL + TSVCS+ S+ +S +S +S+
Sbjct: 114 ADAVSSCLNDDLTSVCSSRISQKTSSMDVYSECGSSN 150
>At3g63430.1 68416.m07142 expressed protein similarity to predicted
protein, Arabidopsis thaliana
Length = 540
Score = 28.3 bits (60), Expect = 3.3
Identities = 20/68 (29%), Positives = 28/68 (41%)
Frame = -3
Query: 471 ERRESGALRDSSREWSRGGAGSFYSISKRAVRQEVPYDEHETVRYAHVEKFENQTVVPDF 292
++R S + SSR W S+ RAV +H +R VE ENQ P
Sbjct: 67 QQRSSSSSSSSSRPWRFSKEAPRLSLDSRAVVDAKGCLKHRQIRADAVEA-ENQRGSPSV 125
Query: 291 VERFCDVE 268
+ R +E
Sbjct: 126 IARLMGLE 133
>At5g42840.1 68418.m05221 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 671
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 268 FDVAKAFDKVWHNGLIFKLFNMGVPD 345
FD+ + FD H+G KL G PD
Sbjct: 51 FDIQEIFDHPSHDGHCLKLLTTGAPD 76
>At2g37840.2 68415.m04646 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 596
Score = 27.5 bits (58), Expect = 5.8
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Frame = +2
Query: 11 VYTNPVNQKIIQRVTAQLASSCLWANCTSVCSTNASE--TSSHPRAFSSMNNSDSVQITH 184
VY + K ++ + QLA +W +C T A S + + + +S TH
Sbjct: 388 VYERIESDKHLEAFSIQLAILAIWKQALHICHTQAISGLEGSPSQDINKLRSSSLKHDTH 447
Query: 185 AYNRCT 202
+ N+ T
Sbjct: 448 SSNKVT 453
>At2g37840.1 68415.m04645 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 733
Score = 27.5 bits (58), Expect = 5.8
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Frame = +2
Query: 11 VYTNPVNQKIIQRVTAQLASSCLWANCTSVCSTNASE--TSSHPRAFSSMNNSDSVQITH 184
VY + K ++ + QLA +W +C T A S + + + +S TH
Sbjct: 525 VYERIESDKHLEAFSIQLAILAIWKQALHICHTQAISGLEGSPSQDINKLRSSSLKHDTH 584
Query: 185 AYNRCT 202
+ N+ T
Sbjct: 585 SSNKVT 590
>At4g15720.1 68417.m02393 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 616
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = -3
Query: 267 EEGSRVDRFWSVKSYENVLRETVHLLYA*VICTESELFIDENALG*DEVSEAFVEQTLVQ 88
+E ++RF +K E ++E H + +I T S +F+D + DE+ E+ +
Sbjct: 498 DESGEIERF--LKDLEKRMKERGHRGSSSMITTSSSVFVDVDEEAKDEMVSLHCERLALA 555
Query: 87 FAQRH 73
+ H
Sbjct: 556 YGLLH 560
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,384,463
Number of Sequences: 28952
Number of extensions: 233413
Number of successful extensions: 746
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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