Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312C01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi...    28   0.97 
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po...    25   6.8  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    25   6.8  
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    25   9.0  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    25   9.0  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   9.0  

>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
           Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 374 HQFSVTSNKLFIFAVFMPATRVYSKALPPNKFL 276
           ++F    NK+  F +F    R+  + LPPNK L
Sbjct: 338 YEFLDNQNKVSEFPLFTAVYRIVYEGLPPNKLL 370


>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 586

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +1

Query: 139 LVYAVFVYNKVKNNQYASFVNRGAQLRTVDPTCVI 243
           +VY + + +   +++Y+ F +   QL  + PTC++
Sbjct: 89  IVYIIKLQDSEIHHRYSEFASLRVQLSRLYPTCLV 123


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 246 TDDTCWVYRPKLCSPINEARVLIIFNF-IVNKNS 148
           TDD     R KL SP NEA +L   N  I N+N+
Sbjct: 58  TDDPSVEIRSKLVSPDNEANLLSDQNITISNENN 91


>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +1

Query: 340 INNLLDVTENWWGSTIEQEIKKQIFDF 420
           +  ++++ + W G+ I  E+   IFDF
Sbjct: 219 VYRVIELAQGWEGAVITHEVWFDIFDF 245


>SPCC550.03c |||RNA helicase involved in mRNA
            catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
 Frame = +1

Query: 4    NNCKYGLISIRGMEKK----MMVD-GNLIERNNGQF-MVQFHMDSQSEIMGLVYAVFVYN 165
            N  KYGLI++ G+E+     + +D G + +R  G F  +     S  +   L++    ++
Sbjct: 894  NQFKYGLINLSGIERVCNTILRIDSGGIRDRRGGAFRKLSEQFASIKKFSDLLFEEVNWS 953

Query: 166  KVKNNQY 186
            KV++ ++
Sbjct: 954  KVRDFEF 960


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +1

Query: 268 KVSRNLFGGNALEYTLVAGIK 330
           KVS  L  GNA EYT V  +K
Sbjct: 173 KVSHILASGNATEYTTVWDVK 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,232,025
Number of Sequences: 5004
Number of extensions: 46076
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)