Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312C01f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0610 + 5030130-5030247,5030957-5033193 29 3.0
01_04_0048 - 15421003-15422355 29 3.0
09_04_0072 + 14323449-14324274,14324351-14324447,14325175-143252... 27 6.9
12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,752... 27 9.1
11_08_0080 - 28208043-28208138,28208187-28208257,28208300-282086... 27 9.1
07_01_0839 + 6823028-6823074,6823449-6823992,6827017-6828258 27 9.1
03_02_0735 + 10811326-10812342,10813199-10813555,10813962-108142... 27 9.1
01_06_0300 + 28312590-28313939 27 9.1
>12_01_0610 + 5030130-5030247,5030957-5033193
Length = 784
Score = 28.7 bits (61), Expect = 3.0
Identities = 21/59 (35%), Positives = 29/59 (49%)
Frame = +1
Query: 37 GMEKKMMVDGNLIERNNGQFMVQFHMDSQSEIMGLVYAVFVYNKVKNNQYASFVNRGAQ 213
G K+ V NL RN G+F V+ SEI LV AV ++ + AS ++G Q
Sbjct: 718 GRGSKVSVSANLNSRNLGRFCVKTSTSDHSEI-ALVAAVTLFQFFLRRRTAS-TDKGEQ 774
>01_04_0048 - 15421003-15422355
Length = 450
Score = 28.7 bits (61), Expect = 3.0
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +1
Query: 55 MVDGNLIERNNGQFMVQFHMDS 120
+ DG+LI R++G+F+ Q+H+ S
Sbjct: 380 IADGSLIYRHHGKFLAQYHVRS 401
>09_04_0072 +
14323449-14324274,14324351-14324447,14325175-14325277,
14325359-14325412,14325495-14325569,14325597-14325650,
14325687-14325755,14325840-14325923,14326115-14326312,
14326428-14326927,14327011-14327140,14328226-14328317,
14328776-14328954,14329114-14329316,14329398-14329499,
14330047-14330209,14330690-14330979,14331088-14331225,
14331311-14331390,14331510-14331606,14331685-14331814,
14331921-14332162
Length = 1301
Score = 27.5 bits (58), Expect = 6.9
Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Frame = +1
Query: 304 EYTLVAGIKTAKINNLLDVTENWWGSTIEQEIKKQIFDFDDWXNHA--IAVYLPYLLEED 477
E L + + INNLL E W EIK+ D A + YLP LL E
Sbjct: 554 EKALKSNTRDPLINNLLPSMEFWDAEKTIHEIKQYYCSLDTPGAGAQISSAYLPELLSEL 613
Query: 478 FEA 486
EA
Sbjct: 614 IEA 616
>12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,
7526206-7526295,7526404-7526553,7527333-7528094,
7528177-7528496,7528581-7528707,7528792-7528959,
7529054-7530466,7530563-7530823,7530983-7531144,
7531976-7532121,7532601-7532667,7533483-7533587
Length = 1707
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Frame = +1
Query: 154 FVYNKVKNNQYASFVNRGAQL--------RTVDPTCVIGFKGIQKVKVSRN 282
F+ ++K ++ SF+ G + +V+PTC+ GI +VK RN
Sbjct: 1417 FIIKQIKKTEFDSFLKFGLEYFKHFGVSQASVNPTCLAKILGIYQVKEIRN 1467
>11_08_0080 -
28208043-28208138,28208187-28208257,28208300-28208603,
28210483-28211544
Length = 510
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 97 MVQFHMDSQSEIMGLVYAVFVYNKVKNNQYASF-VNRG 207
M+QFH D+ S M Y F YN + YA F NRG
Sbjct: 192 MLQFHRDTGSPFMVNPYPYFSYNN-QTLDYALFRPNRG 228
>07_01_0839 + 6823028-6823074,6823449-6823992,6827017-6828258
Length = 610
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 28 SIRGMEKKMMVDGNLIERNNGQFMVQFHMDSQ 123
S+R + K + DGN +ERN+ +V FH+ Q
Sbjct: 159 SLRHVLDKWIEDGNQLERNDA-MLVLFHLKKQ 189
>03_02_0735 +
10811326-10812342,10813199-10813555,10813962-10814225,
10814894-10815010,10815796-10815944,10816315-10816606,
10816681-10816845,10817106-10817357
Length = 870
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +1
Query: 223 VDPTCVIGFKGIQKVKVSRNLFGGNALEYTLVAGIKTAKINNLLDVTENWWGSTIEQEIK 402
V C + G+ +K +F G+ EY G++ A +N + +GST +++K
Sbjct: 806 VSKNCQLAELGLDDLKSVHPVFEGDVYEYL---GVENA-VNKFIS-----YGSTGSEQVK 856
Query: 403 KQIFDF 420
KQ+ D+
Sbjct: 857 KQLEDW 862
>01_06_0300 + 28312590-28313939
Length = 449
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -3
Query: 171 NFIVNKNSID*AHNFTLTVHMELDHKLTIIPFYKISINHHLLFH 40
N +V S D AH+ V+ +D LT+IP +S + + FH
Sbjct: 122 NLVVLSASFDHAHHIYYLVYDGIDESLTMIP--SLSPHRFVAFH 163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,381,750
Number of Sequences: 37544
Number of extensions: 258178
Number of successful extensions: 555
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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