BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS312C01f (521 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11) 56 1e-08 SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14) 30 1.3 SB_1100| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1 SB_19086| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4 SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5) 27 7.1 SB_50320| Best HMM Match : PHR (HMM E-Value=0.042) 27 9.4 >SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11) Length = 3369 Score = 56.4 bits (130), Expect = 1e-08 Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 5/166 (3%) Frame = +1 Query: 1 DNNC-KYGLISIRGMEKKMMVDGNLIERNNGQFMVQFHMDSQSEIMGLVYAVFVYNKVKN 177 DN C + +I+ R +E + N + N G+ ++ + V N + N Sbjct: 1253 DNTCYELAVITARRLEDVTSITENTFQLNTGRNVLMLQ-SVHTLPQPTKNLTLVDNTLSN 1311 Query: 178 NQYASFVNRGAQLRTVDPTCVIGFKGIQKVKVSR---NLFGGNALEYTLVAGIKTAKINN 348 N Y S++ G+ +C + G+ + K +R N F + + N Sbjct: 1312 NNYTSWMMSGSG------SCAVTLSGMLQHKTTRFWHNRFVNPDFDQEFCISVPARSQRN 1365 Query: 349 LLDVTENWWGSTIEQEIKKQIFDFDDWXNHAIAVYLPYLLE-EDFE 483 LDV+ NWWGS Q++ ++ DFDD + + P+LL DF+ Sbjct: 1366 RLDVSHNWWGSRTAQDVADRVLDFDDNFDLFSLDFRPFLLSANDFD 1411 Score = 41.5 bits (93), Expect = 4e-04 Identities = 26/70 (37%), Positives = 35/70 (50%) Frame = +1 Query: 268 KVSRNLFGGNALEYTLVAGIKTAKINNLLDVTENWWGSTIEQEIKKQIFDFDDWXNHAIA 447 +V NLF N+ L+A + N++D NWW + E I+ +I DF A A Sbjct: 542 RVQGNLFSDNS-HSKLLASMHYNH-RNVIDARYNWWDTKDECLIQDRIQDFHTRAQLATA 599 Query: 448 VYLPYLLEED 477 Y PYLL ED Sbjct: 600 DYFPYLLSED 609 >SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14) Length = 829 Score = 29.9 bits (64), Expect = 1.3 Identities = 23/64 (35%), Positives = 28/64 (43%) Frame = -1 Query: 395 SCSMVLPHQFSVTSNKLFIFAVFMPATRVYSKALPPNKFLLTFTF*IPLKPMTHVGSTVL 216 +C VL FSVT +I VF VY+ A KF F F L MTH+ S + Sbjct: 305 TCYNVLSSYFSVTLCIYYILLVFCAVIFVYNCAWTYTKFNRPFDFKKEL--MTHIQSPIQ 362 Query: 215 SCAP 204 P Sbjct: 363 KKTP 366 >SB_1100| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 122 Score = 28.3 bits (60), Expect = 4.1 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Frame = -3 Query: 231 WVYRPKLCSPINEARVLIIFNFIVNKNSID*AHNFTLTVHMELDHKLTIIPF--YKISI 61 W+++P C ++ L + K SI H FT+ +H E ++++ PF ++IS+ Sbjct: 31 WLHKPLPCGNFSDTSSL---KLLKTKGSI--GHAFTVCIHTENQNQVSFYPFVLHEISV 84 >SB_19086| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 594 Score = 27.9 bits (59), Expect = 5.4 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = -3 Query: 228 VYRPKLCSPINEARVLIIFNFIVNKNSID*AHNFTLTVHMEL 103 VYR L + +N+ L +F + K ++D HNF +V+ L Sbjct: 89 VYRALLRATVNKGPSLQVFAWTSRKVTLDIVHNFMSSVYNNL 130 >SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5) Length = 436 Score = 27.5 bits (58), Expect = 7.1 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = +1 Query: 415 DFDDWXNHAIAVYLPYLLEEDFEASLSPTF 504 +F+D N ++ V L LL + EA L PTF Sbjct: 200 NFNDLINESVEVQLQALLGPEAEAFLKPTF 229 >SB_50320| Best HMM Match : PHR (HMM E-Value=0.042) Length = 310 Score = 27.1 bits (57), Expect = 9.4 Identities = 11/41 (26%), Positives = 24/41 (58%) Frame = +2 Query: 101 SNSIWTVKVKLWA*SMLFLFTIKLKIINTRASLIGEHNLGR 223 ++ ++ +KL+ ++LF F I L I+N ++ + N G+ Sbjct: 107 NSELYLTGIKLFGETILFNFNINLIILNGNNEVVSQCNFGK 147 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,770,707 Number of Sequences: 59808 Number of extensions: 305518 Number of successful extensions: 1285 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 1256 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1285 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1172759136 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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