SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312C01f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)                  56   1e-08
SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14)                 30   1.3  
SB_1100| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.1  
SB_19086| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5)                    27   7.1  
SB_50320| Best HMM Match : PHR (HMM E-Value=0.042)                     27   9.4  

>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
          Length = 3369

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 5/166 (3%)
 Frame = +1

Query: 1    DNNC-KYGLISIRGMEKKMMVDGNLIERNNGQFMVQFHMDSQSEIMGLVYAVFVYNKVKN 177
            DN C +  +I+ R +E    +  N  + N G+ ++       +          V N + N
Sbjct: 1253 DNTCYELAVITARRLEDVTSITENTFQLNTGRNVLMLQ-SVHTLPQPTKNLTLVDNTLSN 1311

Query: 178  NQYASFVNRGAQLRTVDPTCVIGFKGIQKVKVSR---NLFGGNALEYTLVAGIKTAKINN 348
            N Y S++  G+       +C +   G+ + K +R   N F     +      +      N
Sbjct: 1312 NNYTSWMMSGSG------SCAVTLSGMLQHKTTRFWHNRFVNPDFDQEFCISVPARSQRN 1365

Query: 349  LLDVTENWWGSTIEQEIKKQIFDFDDWXNHAIAVYLPYLLE-EDFE 483
             LDV+ NWWGS   Q++  ++ DFDD  +     + P+LL   DF+
Sbjct: 1366 RLDVSHNWWGSRTAQDVADRVLDFDDNFDLFSLDFRPFLLSANDFD 1411



 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 26/70 (37%), Positives = 35/70 (50%)
 Frame = +1

Query: 268 KVSRNLFGGNALEYTLVAGIKTAKINNLLDVTENWWGSTIEQEIKKQIFDFDDWXNHAIA 447
           +V  NLF  N+    L+A +      N++D   NWW +  E  I+ +I DF      A A
Sbjct: 542 RVQGNLFSDNS-HSKLLASMHYNH-RNVIDARYNWWDTKDECLIQDRIQDFHTRAQLATA 599

Query: 448 VYLPYLLEED 477
            Y PYLL ED
Sbjct: 600 DYFPYLLSED 609


>SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14)
          Length = 829

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 23/64 (35%), Positives = 28/64 (43%)
 Frame = -1

Query: 395 SCSMVLPHQFSVTSNKLFIFAVFMPATRVYSKALPPNKFLLTFTF*IPLKPMTHVGSTVL 216
           +C  VL   FSVT    +I  VF     VY+ A    KF   F F   L  MTH+ S + 
Sbjct: 305 TCYNVLSSYFSVTLCIYYILLVFCAVIFVYNCAWTYTKFNRPFDFKKEL--MTHIQSPIQ 362

Query: 215 SCAP 204
              P
Sbjct: 363 KKTP 366


>SB_1100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -3

Query: 231 WVYRPKLCSPINEARVLIIFNFIVNKNSID*AHNFTLTVHMELDHKLTIIPF--YKISI 61
           W+++P  C   ++   L     +  K SI   H FT+ +H E  ++++  PF  ++IS+
Sbjct: 31  WLHKPLPCGNFSDTSSL---KLLKTKGSI--GHAFTVCIHTENQNQVSFYPFVLHEISV 84


>SB_19086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 594

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 228 VYRPKLCSPINEARVLIIFNFIVNKNSID*AHNFTLTVHMEL 103
           VYR  L + +N+   L +F +   K ++D  HNF  +V+  L
Sbjct: 89  VYRALLRATVNKGPSLQVFAWTSRKVTLDIVHNFMSSVYNNL 130


>SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5)
          Length = 436

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 415 DFDDWXNHAIAVYLPYLLEEDFEASLSPTF 504
           +F+D  N ++ V L  LL  + EA L PTF
Sbjct: 200 NFNDLINESVEVQLQALLGPEAEAFLKPTF 229


>SB_50320| Best HMM Match : PHR (HMM E-Value=0.042)
          Length = 310

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +2

Query: 101 SNSIWTVKVKLWA*SMLFLFTIKLKIINTRASLIGEHNLGR 223
           ++ ++   +KL+  ++LF F I L I+N    ++ + N G+
Sbjct: 107 NSELYLTGIKLFGETILFNFNINLIILNGNNEVVSQCNFGK 147


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,770,707
Number of Sequences: 59808
Number of extensions: 305518
Number of successful extensions: 1285
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -