Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312C01f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr...    90   8e-19
L17337-1|AAP68928.1|  593|Caenorhabditis elegans Hypothetical pr...    33   0.094
AL110500-3|CAB54483.1|  493|Caenorhabditis elegans Hypothetical ...    33   0.12 
U80452-5|AAB37859.1|  180|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AB006659-1|BAA21847.1|  655|Caenorhabditis elegans E6-AP ubiquit...    28   4.7  
U80838-6|AAC71115.1|  169|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AC024804-5|AAF60747.2|  143|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein
            C06B8.7 protein.
          Length = 3118

 Score = 90.2 bits (214), Expect = 8e-19
 Identities = 46/155 (29%), Positives = 82/155 (52%)
 Frame = +1

Query: 13   KYGLISIRGMEKKMMVDGNLIERNNGQFMVQFHMDSQSEIMGLVYAVFVYNKVKNNQYAS 192
            ++G++ +RGMEK ++ + N    N G +M++    SQ      V +   YN ++ N++ +
Sbjct: 1599 QFGMVELRGMEKNLICERNRFFFNWGHWMIKLDATSQYLRQIDVPSYVQYNYIEKNRFIN 1658

Query: 193  FVNRGAQLRTVDPTCVIGFKGIQKVKVSRNLFGGNALEYTLVAGIKTAKINNLLDVTENW 372
               RG  +     +  +G  G QKV+V  N F    +++ LV+G K + +   ++ T NW
Sbjct: 1659 --QRGDYVDMWPRSYALGVFGSQKVEVHFNRFFNELIDFELVSGAKYSDVFETMNTTHNW 1716

Query: 373  WGSTIEQEIKKQIFDFDDWXNHAIAVYLPYLLEED 477
            WG+  E  I +++FDFDDW     A + P+ +  D
Sbjct: 1717 WGTGNEAVIAQRVFDFDDWNTFTRAEWTPFYVSND 1751


>L17337-1|AAP68928.1|  593|Caenorhabditis elegans Hypothetical
           protein ZK686.2 protein.
          Length = 593

 Score = 33.5 bits (73), Expect = 0.094
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
 Frame = +1

Query: 160 YNKVKNNQY--ASFVNRGAQLRTVDPTCVIGFK--GIQKVKVSRNLFGGNALE--YTLVA 321
           +NK +N     +  + RG  L  VD  CVI +      K+ V R    G A +  Y +  
Sbjct: 445 FNKNENRVLICSDVLARGTDLNKVD--CVINYNLPADDKLFVHRAGRTGRAGQDGYVISV 502

Query: 322 GIKTAK--INNLLDVTENWWGSTIEQEIKKQIFDFD 423
           G K +K     +L VT N WG T+E+++++ IF+ D
Sbjct: 503 GDKESKRLFVKMLKVT-NLWGDTVEEQMEEYIFEKD 537


>AL110500-3|CAB54483.1|  493|Caenorhabditis elegans Hypothetical
           protein Y87G2A.3 protein.
          Length = 493

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +1

Query: 370 WWGSTIEQEIKKQIFDFDDWXNHAIAVYLPYLLEEDFEASLSPTF-SPDSV 519
           W+G     ++ K++  FDDW N A+ V L  +L ++   +++ ++ S D+V
Sbjct: 152 WFGPNTAAQVMKKLTIFDDWSNIAVHVALDNILVKEDAITMATSYPSEDAV 202


>U80452-5|AAB37859.1|  180|Caenorhabditis elegans Hypothetical
           protein C16C8.5 protein.
          Length = 180

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +1

Query: 325 IKTAKINNLLDVTENWWGSTIEQEIKKQIFDFDDWXNHAIAVYLPYLL 468
           I+ AKI   L+  +N  G+ +      +IF FDD+  HA+ V   YL+
Sbjct: 62  IENAKIKEELENLKNG-GNRVADNSLFEIFVFDDYKYHAVEVRNSYLI 108


>AB006659-1|BAA21847.1|  655|Caenorhabditis elegans E6-AP
           ubiquitin-protein ligase protein.
          Length = 655

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 423 RLEXSCYSGLFTVSTRRRFRSK-PFTN 500
           RL   C + + + STRRRFR + PF+N
Sbjct: 121 RLFVDCAAPIISFSTRRRFRKRDPFSN 147


>U80838-6|AAC71115.1|  169|Caenorhabditis elegans Hypothetical
           protein F47F6.4 protein.
          Length = 169

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +1

Query: 1   DNNCKYGLISIRGMEKKMMVDGNLIERNNGQFMVQFHMDSQSEIM 135
           +NNC++  IS+ G     +   N +   NG     F +  QS ++
Sbjct: 54  ENNCRFNFISVEGSLSNSL-HNNYLTATNGLIDSSFEIPPQSRVI 97


>AC024804-5|AAF60747.2|  143|Caenorhabditis elegans Hypothetical
           protein Y51H7BR.4 protein.
          Length = 143

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 355 LINYLFSLFLCQPQGCILKHYPQINFCS 272
           LI ++F L LC    C + HY   NF S
Sbjct: 79  LIPHIFLLILCNSLACYVLHYTISNFDS 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,086,940
Number of Sequences: 27780
Number of extensions: 250741
Number of successful extensions: 531
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)