Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312C01f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g59675.1 68414.m06712 F-box family protein similar to SKP1 in...    30   1.1  
At4g11410.1 68417.m01839 short-chain dehydrogenase/reductase (SD...    28   4.4  
At3g17550.1 68416.m02241 NLI interacting factor (NIF) family pro...    27   5.8  
At1g75820.1 68414.m08807 CLAVATA1 receptor kinase (CLV1) identic...    27   7.7  

>At1g59675.1 68414.m06712 F-box family protein similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 164

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 267 HFLNSFETDDTCWVYRPKLCSPINEARVLIIFNFIVNKNSID 142
           +F+NSF T       RP +   + +  +L +F++ V+KNS D
Sbjct: 49  NFINSFATGSLA--SRPSVLLTVRKGDILFVFSYPVDKNSSD 88


>At4g11410.1 68417.m01839 short-chain dehydrogenase/reductase (SDR)
           family protein contains INTERPRO family IPR002198
           Short-chain dehydrogenase/reductase (SDR) superfamily
          Length = 317

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = +1

Query: 226 DPTCVIGFKGIQKVKVSRNLFGGNALEYTLVAGIKTAKINNL-LDVTENWWGSTIEQEIK 402
           + T V+  +G+  V   RN   GN +   ++  I  AKI+ + LD++      +   E +
Sbjct: 44  ETTRVLALRGVHVVMAVRNTDSGNQVRDKILKEIPQAKIDVMKLDLSSMASVRSFASEYQ 103

Query: 403 KQIFDFDDWXNHAIAVYLPYLLEED 477
                 +   N+A  +  P+LL  D
Sbjct: 104 SLDLPLNLLINNAGIMACPFLLSSD 128


>At3g17550.1 68416.m02241 NLI interacting factor (NIF) family
           protein contains Pfam profile PF03031: NLI interacting
           factor
          Length = 296

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 374 HQFSVTSNKLFIFAVFMPATRVYSKAL 294
           H+F   +N+LF   V+   TRVY+++L
Sbjct: 140 HEFLKEANELFTMYVYTMGTRVYAESL 166


>At1g75820.1 68414.m08807 CLAVATA1 receptor kinase (CLV1) identical
           to receptor kinase (CLV1) GB:AAB58929 GI:2160756
           [Arabidopsis thaliana]
          Length = 980

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/69 (21%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
 Frame = +1

Query: 250 KGIQKVKVSRNLFGGNALEYTLVAGIKTAKINNLLDVTENWWGS----TIEQEIKKQIFD 417
           K + K+++ +NL  G     T+ AG+    +  ++++T+N++      T+  ++  QI+ 
Sbjct: 409 KSLTKIRIVKNLLNG-----TVPAGLFNLPLVTIIELTDNFFSGELPVTMSGDVLDQIYL 463

Query: 418 FDDWXNHAI 444
            ++W +  I
Sbjct: 464 SNNWFSGEI 472


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,315,764
Number of Sequences: 28952
Number of extensions: 229629
Number of successful extensions: 491
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)