Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312B12f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1056 + 23619815-23619957,23621080-23621188,23622555-23622635 99 2e-21
12_02_0358 - 17948460-17948687,17949442-17949534 95 2e-20
10_06_0133 - 11081169-11081252,11082857-11082965,11083865-11084031 87 6e-18
11_06_0058 - 19688221-19688448,19688899-19688949,19689061-19689153 78 4e-15
03_05_0798 + 27798095-27798190,27798325-27798366,27799152-277991... 44 7e-05
11_01_0316 + 2361904-2362237,2362454-2363178 30 1.3
12_01_0418 - 3304741-3304904,3305579-3305762,3307254-3307347,330... 27 6.9
07_03_1707 + 28866054-28866065,28866185-28866269,28866398-28867149 27 6.9
07_03_0310 - 16574364-16574538,16574648-16574865,16574955-165750... 27 9.1
>07_03_1056 + 23619815-23619957,23621080-23621188,23622555-23622635
Length = 110
Score = 99.1 bits (236), Expect = 2e-21
Identities = 43/106 (40%), Positives = 66/106 (62%)
Frame = +2
Query: 53 MGKIFLDHIGGTRLFSCASCDVNLTNRSELISTRFTGATGRAFLFHKVVNLIYSEVQDRV 232
MG +F++ + G ++F C C V+ + ++S F G GRA+LF VVN+ +DR+
Sbjct: 1 MGLLFVESLPGPKVFKCKFCGVDSASPDAIVSKEFRGRHGRAYLFDSVVNVSLGPREDRL 60
Query: 233 MLTGRHMVRDVSCKNCGTKLGWVYEFATEENQRYKEGRVILERALV 370
++TG H V D+ C C LGW YE A E+Q+YKEG+ ILE+ ++
Sbjct: 61 LMTGLHTVNDIYCSCCQRLLGWRYEKAYSEDQKYKEGKYILEKHMM 106
>12_02_0358 - 17948460-17948687,17949442-17949534
Length = 106
Score = 95.5 bits (227), Expect = 2e-20
Identities = 40/100 (40%), Positives = 62/100 (62%)
Frame = +2
Query: 83 GTRLFSCASCDVNLTNRSELISTRFTGATGRAFLFHKVVNLIYSEVQDRVMLTGRHMVRD 262
G R++SC +C ++ ++IS F G GRAFLF +N++ +DR ++TG H V D
Sbjct: 6 GPRVYSCCNCRNHVCLHDDIISKAFQGRNGRAFLFSHAMNVVVGAKEDRQLMTGLHTVAD 65
Query: 263 VSCKNCGTKLGWVYEFATEENQRYKEGRVILERALVTESD 382
+ C +C LGW YE A EE Q+YKEG+ I E++ + + +
Sbjct: 66 IYCNDCREVLGWKYERAYEETQKYKEGKFIFEKSKIVKEN 105
>10_06_0133 - 11081169-11081252,11082857-11082965,11083865-11084031
Length = 119
Score = 87.4 bits (207), Expect = 6e-18
Identities = 39/91 (42%), Positives = 56/91 (61%)
Frame = +2
Query: 92 LFSCASCDVNLTNRSELISTRFTGATGRAFLFHKVVNLIYSEVQDRVMLTGRHMVRDVSC 271
+ C C V+ + ++S F G GRA+LF VVN+ +DR ++TG H V+D+ C
Sbjct: 22 VLKCRRCRVDAASADAILSRDFRGRFGRAYLFDHVVNISLGPNEDRYLMTGLHTVKDIYC 81
Query: 272 KNCGTKLGWVYEFATEENQRYKEGRVILERA 364
C LGW YE A EE+++YKEG+ ILE+A
Sbjct: 82 SCCQQILGWRYEKAYEESEKYKEGKFILEKA 112
>11_06_0058 - 19688221-19688448,19688899-19688949,19689061-19689153
Length = 123
Score = 78.2 bits (184), Expect = 4e-15
Identities = 33/74 (44%), Positives = 48/74 (64%)
Frame = +2
Query: 161 GATGRAFLFHKVVNLIYSEVQDRVMLTGRHMVRDVSCKNCGTKLGWVYEFATEENQRYKE 340
G GRAFLF +N+ +DR ++TG H V D+ C++C LGW YE A EE+Q+YKE
Sbjct: 49 GRNGRAFLFSHAMNISMGPKEDRQLMTGLHTVADIYCRDCREVLGWKYERAFEESQKYKE 108
Query: 341 GRVILERALVTESD 382
G+ I E+A + + +
Sbjct: 109 GKFIFEKAKIVKEN 122
>03_05_0798 +
27798095-27798190,27798325-27798366,27799152-27799190,
27799238-27799420
Length = 119
Score = 44.0 bits (99), Expect = 7e-05
Identities = 21/56 (37%), Positives = 36/56 (64%)
Frame = +2
Query: 53 MGKIFLDHIGGTRLFSCASCDVNLTNRSELISTRFTGATGRAFLFHKVVNLIYSEV 220
MG++F+ H+ G +++SC C +L S++IS F G+A+LF+K+ L Y+ V
Sbjct: 1 MGRLFVMHLEG-KVYSCKHCHTHLGLSSDIISKSFHCKHGKAYLFNKLKLLAYNTV 55
>11_01_0316 + 2361904-2362237,2362454-2363178
Length = 352
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/87 (21%), Positives = 30/87 (34%)
Frame = +2
Query: 152 RFTGATGRAFLFHKVVNLIYSEVQDRVMLTGRHMVRDVSCKNCGTKLGWVYEFATEENQR 331
RF G G AF FH + + V DR + H + W+ A +
Sbjct: 123 RFIGGDGNAFYFHGRRDADFCVVSDRDLHINAHFIGKRGADGMSRDFTWIQAIAVLFDDG 182
Query: 332 YKEGRVILERALVTESDGIEEIQVNVD 412
+ R D ++ ++V VD
Sbjct: 183 GAHRLYVGARKTAAWDDDVDRLEVIVD 209
>12_01_0418 -
3304741-3304904,3305579-3305762,3307254-3307347,
3308530-3308882,3309140-3309274,3309354-3309392,
3309587-3309652,3309739-3309834,3310291-3310527,
3310602-3310722,3310854-3310889,3313062-3313159,
3313298-3313591,3313842-3313904,3314280-3314438,
3314557-3314655
Length = 745
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +2
Query: 116 VNLTNRSELISTRFTGATGRAFLFHKVVNLI--YSEVQDR 229
+N+TN ++++ + AT RA+++ K +LI Y VQ R
Sbjct: 706 INITNMKQVLAPEMSLATVRAYVWKKPEDLILNYKVVQSR 745
>07_03_1707 + 28866054-28866065,28866185-28866269,28866398-28867149
Length = 282
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Frame = +2
Query: 191 KVVNLIYSEVQDRVMLTG----RHMVRDVSCKNCG 283
K++N++Y +RV+++G + + CK CG
Sbjct: 36 KIINIVYENSNNRVIISGHFKPEELAHKLRCKACG 70
>07_03_0310 -
16574364-16574538,16574648-16574865,16574955-16575019,
16575101-16575191,16575407-16575613,16576805-16577041
Length = 330
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +3
Query: 48 KKWVKY--FLIILEERDYFHAHHAMSILRIVP 137
+KW K F+ + E D+FH A+++LRI P
Sbjct: 204 EKWPKKAAFVRLAGEGDWFHQFRAVALLRISP 235
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,927,048
Number of Sequences: 37544
Number of extensions: 200588
Number of successful extensions: 551
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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