Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312B12f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4535| Best HMM Match : F5_F8_type_C (HMM E-Value=3.92364e-44)       67   7e-12
SB_23989| Best HMM Match : Yippee (HMM E-Value=2.8e-09)                61   5e-10
SB_36184| Best HMM Match : UBA (HMM E-Value=2.4e-09)                   33   0.19 
SB_15980| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_4457| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.0  
SB_3861| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.0  
SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_16120| Best HMM Match : efhand (HMM E-Value=0.0059)                 29   3.1  
SB_51978| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_4535| Best HMM Match : F5_F8_type_C (HMM E-Value=3.92364e-44)
          Length = 972

 Score = 67.3 bits (157), Expect = 7e-12
 Identities = 33/75 (44%), Positives = 46/75 (61%)
 Frame = +2

Query: 167  TGRAFLFHKVVNLIYSEVQDRVMLTGRHMVRDVSCKNCGTKLGWVYEFATEENQRYKEGR 346
            T R   F   VN+     ++RV+LTG H V D+ C+ C T LGW YE A E +Q+YKEG+
Sbjct: 898  TLRFVYFISSVNVGCGPAEERVLLTGLHAVSDIFCECCKTTLGWKYEHAFEISQKYKEGK 957

Query: 347  VILERALVTESDGIE 391
             I+E A + + +G E
Sbjct: 958  YIIEMAHMIKDNGWE 972


>SB_23989| Best HMM Match : Yippee (HMM E-Value=2.8e-09)
          Length = 93

 Score = 61.3 bits (142), Expect = 5e-10
 Identities = 27/58 (46%), Positives = 37/58 (63%)
 Frame = +2

Query: 197 VNLIYSEVQDRVMLTGRHMVRDVSCKNCGTKLGWVYEFATEENQRYKEGRVILERALV 370
           VNL     ++R +LTG H+V D+ C  C T +GW Y  A EE ++YK G+ ILERA +
Sbjct: 2   VNLTTGIAEERTLLTGVHVVADLYCNKCATYVGWKYIDAYEEKEKYKVGKFILERAKI 59


>SB_36184| Best HMM Match : UBA (HMM E-Value=2.4e-09)
          Length = 1337

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 27/106 (25%), Positives = 46/106 (43%)
 Frame = -3

Query: 372  VTKARSNITLPSLYL*FSSVANSYTQPSFVPQFLQETSRTM*RPVSITRS*TSE*IRFTT 193
            V +  S +    +Y  FS+    Y      P  L + + +M R   + R+ +++  RF  
Sbjct: 1107 VAQRSSGMRTDKMYKAFSTKKFRYENRPDTPVPLAQRNSSM-RTDQMYRAFSTKKSRFCA 1165

Query: 192  LWNKNARPVAPVNRVLINSERFVRLTSHDAHENSRVPPI*SRNILP 55
            +  +   P   V   L++     +L SH AH  S V P+   N+LP
Sbjct: 1166 VVRREGFPEDDVMSELVHQPSTFKLVSHPAHTISIVAPVVLINLLP 1211


>SB_15980| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 200 NLIYSEVQDRVMLTGRHMVRDVSCKNCGTKLG 295
           N + +E  DR+  T  +  R + C +CG KLG
Sbjct: 94  NELTAEHNDRIQATAENTSRSMFCSHCGRKLG 125


>SB_4457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1328

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 200 NLIYSEVQDRVMLTGRHMVRDVSCKNCGTKLG 295
           N + +E  DR+  T  +  R + C +CG KLG
Sbjct: 712 NELTAEHNDRIQATAENTSRSMFCSHCGRKLG 743


>SB_3861| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 69

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 200 NLIYSEVQDRVMLTGRHMVRDVSCKNCGTKLG 295
           N + +E  DR+  T  +  R + C +CG KLG
Sbjct: 25  NELTAEHNDRIQATAENTSRSMFCSHCGRKLG 56


>SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1681

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 200  NLIYSEVQDRVMLTGRHMVRDVSCKNCGTKLG 295
            N + +E  DR+  T  +  R + C  CG KLG
Sbjct: 1075 NELTAEHNDRIQATAENTSRSMFCSYCGRKLG 1106


>SB_16120| Best HMM Match : efhand (HMM E-Value=0.0059)
          Length = 399

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -1

Query: 386 YHHSR*PRLVPILLSLPCIFDSLQ*QIHIPNPASYHSSYKKHHAPCDVLLASH 228
           YHH + P     + SLP I   L   I I +   +H  + KHH P D ++  H
Sbjct: 217 YHHHKHP--TRWMASLPAIA-ILTNTITIHHHLHHHYHHHKHHHPVDGIITGH 266


>SB_51978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/57 (26%), Positives = 23/57 (40%)
 Frame = -1

Query: 428 YFHFNHQH*LEFLQYHHSR*PRLVPILLSLPCIFDSLQ*QIHIPNPASYHSSYKKHH 258
           +FH N  H L   Q HH    +   I++ +  +  +      I  P+S H     HH
Sbjct: 110 HFHHNPYHYLRHSQLHHHPIIKNKVIIIFITILITTFVTANSIITPSSLHHEQSYHH 166


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,116,610
Number of Sequences: 59808
Number of extensions: 251945
Number of successful extensions: 643
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)