Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312B12f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z35600-4|CAB54236.1| 137|Caenorhabditis elegans Hypothetical pr... 106 8e-24
AF038604-4|AAO38680.1| 134|Caenorhabditis elegans Hypothetical ... 99 2e-21
AF038604-3|AAB92012.1| 161|Caenorhabditis elegans Hypothetical ... 99 2e-21
AF038604-2|AAB92013.1| 468|Caenorhabditis elegans Hypothetical ... 55 4e-08
Z69787-7|CAA93643.1| 214|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z81528-1|CAB04282.1| 345|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z78062-4|CAB01498.2| 341|Caenorhabditis elegans Hypothetical pr... 27 8.1
L16621-10|AAA28227.1| 507|Caenorhabditis elegans Temporarily as... 27 8.1
L16621-9|AAL11487.1| 568|Caenorhabditis elegans Temporarily ass... 27 8.1
>Z35600-4|CAB54236.1| 137|Caenorhabditis elegans Hypothetical
protein F37A8.5 protein.
Length = 137
Score = 106 bits (255), Expect = 8e-24
Identities = 51/116 (43%), Positives = 73/116 (62%), Gaps = 1/116 (0%)
Frame = +2
Query: 50 KMGKIFLDHI-GGTRLFSCASCDVNLTNRSELISTRFTGATGRAFLFHKVVNLIYSEVQD 226
K K F ++ G R +SC C NL +ELIS F G+ G+A+LF+ VVN+ ++
Sbjct: 18 KKQKTFQHYLPAGDRCYSCIHCRANLAAHAELISKSFQGSQGKAYLFNAVVNVGCGPAEE 77
Query: 227 RVMLTGRHMVRDVSCKNCGTKLGWVYEFATEENQRYKEGRVILERALVTESDGIEE 394
RV+LTG H V D+ C+ C T LGW YE A E +Q+YKEG+ I+E A + + +G +E
Sbjct: 78 RVLLTGLHAVADIYCEICKTTLGWKYEHAFESSQKYKEGKFIIELAHMVKDNGWDE 133
>AF038604-4|AAO38680.1| 134|Caenorhabditis elegans Hypothetical
protein B0546.4b protein.
Length = 134
Score = 99.1 bits (236), Expect = 2e-21
Identities = 49/105 (46%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Frame = +2
Query: 53 MGKIFLDHIGGT-RLFSCASCDVNLTNRSELISTRFTGATGRAFLFHKVVNLIYSEVQDR 229
MG+ F G L+ C C+ LT EL S FTG+TG A LF + N++Y + R
Sbjct: 1 MGRQFAGICGARGSLYGCVVCNTYLTCSKELTSKAFTGSTGPATLFKRAWNVVYGRCEHR 60
Query: 230 VMLTGRHMVRDVSCKNCGTKLGWVYEFATEENQRYKEGRVILERA 364
M TG H VRDV C C KLGW+YE A E+Q YKE +VI+E A
Sbjct: 61 KMTTGWHTVRDVFCVTCNQKLGWMYEMAVSESQTYKETQVIIENA 105
>AF038604-3|AAB92012.1| 161|Caenorhabditis elegans Hypothetical
protein B0546.4a protein.
Length = 161
Score = 99.1 bits (236), Expect = 2e-21
Identities = 49/105 (46%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Frame = +2
Query: 53 MGKIFLDHIGGT-RLFSCASCDVNLTNRSELISTRFTGATGRAFLFHKVVNLIYSEVQDR 229
MG+ F G L+ C C+ LT EL S FTG+TG A LF + N++Y + R
Sbjct: 1 MGRQFAGICGARGSLYGCVVCNTYLTCSKELTSKAFTGSTGPATLFKRAWNVVYGRCEHR 60
Query: 230 VMLTGRHMVRDVSCKNCGTKLGWVYEFATEENQRYKEGRVILERA 364
M TG H VRDV C C KLGW+YE A E+Q YKE +VI+E A
Sbjct: 61 KMTTGWHTVRDVFCVTCNQKLGWMYEMAVSESQTYKETQVIIENA 105
>AF038604-2|AAB92013.1| 468|Caenorhabditis elegans Hypothetical
protein B0546.3 protein.
Length = 468
Score = 54.8 bits (126), Expect = 4e-08
Identities = 24/48 (50%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Frame = +2
Query: 266 SCKNCGTKLGWVYEFATEENQRYKEGRVILERALVTESDGIEEI-QVN 406
S K+C +LGW+YE A +N++YKEG VILER +TE + +I Q+N
Sbjct: 3 SVKSCRAQLGWMYELAPNDNEKYKEGSVILERMNITEREAFSKISQMN 50
>Z69787-7|CAA93643.1| 214|Caenorhabditis elegans Hypothetical
protein C44C10.9a protein.
Length = 214
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 288 FVPQFLQETSRTM*RPVSITRS*TSE*IRFTTLWNKNARPVAP 160
F+P +QET+ M +PV IT+ E R + + P++P
Sbjct: 101 FIPSPMQETTLMMPKPVQITQRNEDEISRASVAQHVEPAPLSP 143
>Z81528-1|CAB04282.1| 345|Caenorhabditis elegans Hypothetical
protein F35E2.1 protein.
Length = 345
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -1
Query: 362 LVPILLSLPCIFDSLQ*QIHIPNPASYHSSY 270
++P+++SLP + S + IP P+S+ S++
Sbjct: 248 VIPVIVSLPLLLLSFEFYFGIPMPSSFGSTW 278
>Z78062-4|CAB01498.2| 341|Caenorhabditis elegans Hypothetical
protein F16D3.6 protein.
Length = 341
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -1
Query: 362 LVPILLSLPCIFDSLQ*QIHIPNPASYHSSY 270
++P+++SLP + S + IP P+S+ S++
Sbjct: 244 VIPVIVSLPLLLLSFEFYFGIPMPSSFGSTW 274
>L16621-10|AAA28227.1| 507|Caenorhabditis elegans Temporarily
assigned gene nameprotein 282, isoform a protein.
Length = 507
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 188 HKVVNLIYSEVQDRVMLTGRHMVRDVSCKNCGTKLGWVYEFATE 319
+K+VNL Y+ D+ D + + G LGW ++ TE
Sbjct: 324 YKIVNLYYNYTGDKSTHCANAAKCDSAYGSLGDPLGWPFQTCTE 367
>L16621-9|AAL11487.1| 568|Caenorhabditis elegans Temporarily
assigned gene nameprotein 282, isoform b protein.
Length = 568
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 188 HKVVNLIYSEVQDRVMLTGRHMVRDVSCKNCGTKLGWVYEFATE 319
+K+VNL Y+ D+ D + + G LGW ++ TE
Sbjct: 385 YKIVNLYYNYTGDKSTHCANAAKCDSAYGSLGDPLGWPFQTCTE 428
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,974,134
Number of Sequences: 27780
Number of extensions: 189499
Number of successful extensions: 569
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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