Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312B12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.5  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   5.8  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   7.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   7.7  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   7.7  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 279 VVRSWVGYMN 308
           +V SW+GYMN
Sbjct: 660 IVTSWLGYMN 669


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 83  GTRLFSCASCDVNLTNRSELIS 148
           G++ F C  C  +  N+S L S
Sbjct: 13  GSKPFKCEKCSYSCVNKSMLNS 34


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 63  YFLIILEERDYFHAHHAMSILRIV 134
           YF I     ++   HH+ SI R +
Sbjct: 107 YFHIATTSNEFIRIHHSGSITRSI 130


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 63  YFLIILEERDYFHAHHAMSILRIV 134
           YF I     ++   HH+ SI R +
Sbjct: 107 YFHIATTSNEFIRIHHSGSITRSI 130


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 63  YFLIILEERDYFHAHHAMSILRIV 134
           YF I     ++   HH+ SI R +
Sbjct: 46  YFHIATTSNEFIRIHHSGSITRSI 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,707
Number of Sequences: 438
Number of extensions: 2383
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)