Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312B09f
         (521 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6YGD9 Cluster: RNA polymerase beta chain; n=1; Leptosi...    33   5.2  
UniRef50_Q4T9H5 Cluster: Chromosome 12 SCAF7567, whole genome sh...    32   6.9  
UniRef50_Q4FPM0 Cluster: Xaa-Pro aminopeptidase; n=5; Bacteria|R...    32   6.9  
UniRef50_O16977 Cluster: Zinc metalloproteinase nas-32 precursor...    32   6.9  
UniRef50_Q55CM5 Cluster: Putative uncharacterized protein; n=1; ...    32   9.2  

>UniRef50_A6YGD9 Cluster: RNA polymerase beta chain; n=1; Leptosira
           terrestris|Rep: RNA polymerase beta chain - Leptosira
           terrestris (Pleurastrum terrestre)
          Length = 1142

 Score = 32.7 bits (71), Expect = 5.2
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = -2

Query: 148 PLEAYLKSSSFSSAL-LPVTWGRRNMFSPS-ILLYHIPYHSPLTHIVFH 8
           P EA LKS +F+SAL +PV +  +N      +LL H+P+ +   H + +
Sbjct: 66  PKEAVLKSKTFASALFIPVEYRAKNSIGLYWVLLGHLPFMTKRGHFIIN 114


>UniRef50_Q4T9H5 Cluster: Chromosome 12 SCAF7567, whole genome
           shotgun sequence; n=3; Chordata|Rep: Chromosome 12
           SCAF7567, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 603

 Score = 32.3 bits (70), Expect = 6.9
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = -2

Query: 166 KKQFL--FPLEAYLKSSSFSSALLPVTWGRRNMFSPSILLY---HIPYHSPLTH 20
           KK FL  F L   +    F+S+     W R N F+PSI  +   H+ +H+P+ H
Sbjct: 243 KKDFLGIFCLSRGVIMLLFASSAASSAWSRSNSFTPSISHHTNGHLQHHTPMPH 296


>UniRef50_Q4FPM0 Cluster: Xaa-Pro aminopeptidase; n=5; Bacteria|Rep:
           Xaa-Pro aminopeptidase - Pelagibacter ubique
          Length = 564

 Score = 32.3 bits (70), Expect = 6.9
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +2

Query: 236 GVIASKAPGKFISRTGRPVKIDTL*Y*YKTKRTFNYKN 349
           G+I S  PG F  +    ++I+ L Y  KTKR+FN++N
Sbjct: 477 GMILSNEPG-FYKKNHFGIRIENLIYAKKTKRSFNFEN 513


>UniRef50_O16977 Cluster: Zinc metalloproteinase nas-32 precursor;
           n=2; Caenorhabditis|Rep: Zinc metalloproteinase nas-32
           precursor - Caenorhabditis elegans
          Length = 651

 Score = 32.3 bits (70), Expect = 6.9
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
 Frame = -2

Query: 394 KFYPGLKVYL-----V*TTFIFVIKGAFCFVLVL*CVDFDRASSSTNEFSRSLGCY-DTG 233
           +F+PG  VY      + TT   +++ A  F+    C+ F+  S++TN     +GCY DTG
Sbjct: 210 QFWPGKVVYYYFDSGLTTTVQQIVRDAITFLESNTCLKFELNSTATNRIFSGVGCYSDTG 269


>UniRef50_Q55CM5 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 1080

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
 Frame = -2

Query: 157 FLFPLEAYLKSS-SFSSALLPVTWGRRNMFSPSILL-----YHIPYHSPLTHIVF 11
           F+F +  +L S    SS LLP T+G+    S   L      Y +P++SP+TH+ +
Sbjct: 104 FIFFVFLFLASGIMMSSKLLPFTFGKFMFISYYFLTFTEVKYRVPFYSPITHLKY 158


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 551,914,238
Number of Sequences: 1657284
Number of extensions: 10992408
Number of successful extensions: 25764
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25761
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)