Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312B09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces...    27   1.3  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    27   1.7  
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|...    26   3.9  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    23   4.9  
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p...    25   6.8  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   6.8  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    25   6.8  
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   9.0  

>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 326 KRTFNYKNKCRLNQIDFQPWIKFIIFLKK--NYDVREHKVMI 445
           K+TFN + + R N++D + W K     KK  N   RE K+ I
Sbjct: 237 KKTFNEELQIRKNKLDNEEWDKAFSDAKKLSNMKDREEKLYI 278


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1238

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 219  RGHMQNLH*KLNRNIETAKNSFCFLWKLTLNHHHSPLPFSQSP 91
            RGH+ N+  +LN  +   K  F     +  +  HS LPF  +P
Sbjct: 1054 RGHLNNI--RLNCEVSNCKKCFSNYEDMFKHLQHSHLPFKFTP 1094


>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
 Frame = +2

Query: 326 KRTFNYKNKCR-----LNQIDFQP--WIKFIIFLKKNYDVREHKVMIPLLQVCGPPGRG 481
           KR F++KN  +      N  +  P  W  F   L   +   +   ++P L VCGP G G
Sbjct: 287 KRLFSFKNLLQDASSISNNFEITPESWCSFSNQLL--FSTSKSDYVVPRLMVCGPKGSG 343


>SPAC23C4.19 |spt5||transcription elongation factor
            Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 22.6 bits (46), Expect(2) = 4.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 80   APTPGDWEKGRGE 118
            APTPG W+   G+
Sbjct: 969  APTPGGWDDEEGD 981



 Score = 21.0 bits (42), Expect(2) = 4.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 56  EYGRRKHVAPTPGDW 100
           E   + + APTPG W
Sbjct: 953 EDNSKPYTAPTPGAW 967


>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 446

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 96  SPGVGATCFLLPYSSIIYHTTPLLHISSF 10
           SP   ATC  L +     HT P L+I +F
Sbjct: 36  SPAKNATCTTLNHLLSAQHTRPQLNIHNF 64


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +1

Query: 178 VSIQFLM*ILHMTTLVAIYRCHSIQGSWK 264
           + + F      + T + + RCHS++ +WK
Sbjct: 182 LQVNFSFQARQLNTEIQLRRCHSLEKTWK 210


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +3

Query: 213 DHAGS-YLPVS*HPRLLENSLVELDA-LSKSTHYNTNTKQNAPLITK 347
           D +GS  L V  H  LLENSL  +D+ +S     +    Q+ P+ TK
Sbjct: 21  DLSGSGTLCVGVHSSLLENSLNSIDSFISSKEEISWCGNQSTPIATK 67


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 298 DFDRASSSTNEFSRSLGCYDTGK 230
           D +R S  TN  SRS  CY+ G+
Sbjct: 346 DEERDSGGTNMVSRSETCYNDGQ 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,325,750
Number of Sequences: 5004
Number of extensions: 48614
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)