Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312B09f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0056 + 12955832-12956410,12957398-12957499                       29   1.7  
01_03_0148 - 13153782-13154870,13155823-13156672,13156698-13157008     29   1.7  
12_02_0735 - 22636835-22639502,22639755-22640734                       29   2.3  
03_01_0652 + 4771551-4771821,4771931-4772038,4772744-4773024,477...    28   4.0  

>12_02_0056 + 12955832-12956410,12957398-12957499
          Length = 226

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 41  WYMIEEYGRRKHVAPTPGDW 100
           W ++ + GRR+HV P  G+W
Sbjct: 25  WIVVLQKGRRRHVVPAFGEW 44


>01_03_0148 - 13153782-13154870,13155823-13156672,13156698-13157008
          Length = 749

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 147 LWKLTLNHHHSPLPFSQSPGVGATCFLLPYSSIIYHTTPLLHISS 13
           L+++  + H SP P   SP + A C L  Y + +    P L + S
Sbjct: 570 LYEMRCSLHASPTPSPSSPDMAAACHLSYYCAYLASAAPELLLDS 614


>12_02_0735 - 22636835-22639502,22639755-22640734
          Length = 1215

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 230 FTGVIASKAPGKFISRTGRPVKIDTL*Y*YKTKRTFNYKN 349
           F+ V + K PG   +  G+P + D   + ++TK T+ Y N
Sbjct: 241 FSVVHSMKVPGAAANGNGKPAEFDHARWLFETKGTYGYGN 280


>03_01_0652 +
           4771551-4771821,4771931-4772038,4772744-4773024,
           4773115-4773369,4773451-4773563,4773640-4773735,
           4773844-4773997,4774380-4774697
          Length = 531

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -3

Query: 309 YNVSILTGRPVRLMNFPGALDAMTPVNSYQRGHMQNL 199
           Y  +++TGR +R+  F G LDAM PV +  R  M+ L
Sbjct: 360 YIKAVITGR-IRIWIFSGDLDAMVPVTA-TRQSMERL 394


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,386,598
Number of Sequences: 37544
Number of extensions: 286096
Number of successful extensions: 602
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)