Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312B09f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              23   2.5  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    22   3.3  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    22   3.3  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    22   3.3  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    22   3.3  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   3.3  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   4.4  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   5.8  

>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 65 FHTPLSYTIPLP 30
          FH P++ TIP+P
Sbjct: 48 FHKPITLTIPVP 59


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 464 RKPEVMESLLYVRVHHNFFLEKL 396
           R+P+++ SLL   +H+N   +KL
Sbjct: 299 REPKIISSLLNNTIHNNNNYKKL 321


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 464 RKPEVMESLLYVRVHHNFFLEKL 396
           R+P+++ SLL   +H+N   +KL
Sbjct: 310 REPKIISSLLNNTIHNNNNYKKL 332


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 464 RKPEVMESLLYVRVHHNFFLEKL 396
           R+P+++ SLL   +H+N   +KL
Sbjct: 310 REPKIISSLLNNTIHNNNNYKKL 332


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 464 RKPEVMESLLYVRVHHNFFLEKL 396
           R+P+++ SLL   +H+N   +KL
Sbjct: 299 REPKIISSLLNNTIHNNNNYKKL 321


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +2

Query: 488 CQPCHPVITSL 520
           C+PC+ ++TSL
Sbjct: 5   CEPCNKILTSL 15


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 5/30 (16%), Positives = 18/30 (60%)
 Frame = -3

Query: 261 PGALDAMTPVNSYQRGHMQNLH*KLNRNIE 172
           PG ++++ P+N Y + ++  +   + + ++
Sbjct: 30  PGEINSINPINVYTKAYIYTIKSNMAKTLQ 59


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -1

Query: 464 RKPEVMESLLYVRVHHNFFLEKL 396
           R+P+++ SL    +H+N + +KL
Sbjct: 310 REPKIISSLSNNTIHNNNYNKKL 332


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,894
Number of Sequences: 438
Number of extensions: 3580
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)