Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312B08f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 28 0.73
SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|ch... 27 2.2
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 25 5.2
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch... 25 5.2
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 25 6.8
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch... 25 6.8
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 25 9.0
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 25 9.0
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ... 25 9.0
SPBC1703.03c |||armadillo repeat protein, unknown biological rol... 25 9.0
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 28.3 bits (60), Expect = 0.73
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 8 LEEFYKTASYQKLTSDAFIDRPDST 82
+E+FY+ SY+ DAF++ D+T
Sbjct: 677 IEQFYEITSYESNYDDAFVEYKDAT 701
>SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 209
Score = 26.6 bits (56), Expect = 2.2
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = +2
Query: 116 GEEIILN-DAP----INLLQNKQYPKVPMLIGFANMEGLMRIDLFDEW 244
GE +IL DAP I L++ ++ P+ P L+ F+N + EW
Sbjct: 106 GERLILERDAPSKFSIELVEERREPESPYLLFFSNSSRFSACEESGEW 153
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 25.4 bits (53), Expect = 5.2
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = -2
Query: 511 NIFINKRIFIQIYLIVTSLC**FNRSKGWCHEYNITKIVHIIQNAISVH*TITKIEFFDN 332
+ + IF+ +Y I + F R GW E+ + I A++V T T + F N
Sbjct: 277 SFMVGSIIFLVVYWIGIFIWIGFGRMLGWSDEWQL-----YINTAVAVELTFTSV-FLQN 330
Query: 331 FRY 323
R+
Sbjct: 331 VRH 333
>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 286 SREEIRKSFIHFCPPLVKEIYTH 218
S ++I FIHF PPLV H
Sbjct: 215 SIDKITSLFIHFFPPLVLHTIVH 237
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -3
Query: 345 NSLIIFATFFFWLSFLKCKSAGRKSENRLFIFVLHSSKRSI 223
NSLI + F +KC + GR+ EN +++ L +S +I
Sbjct: 825 NSLI--SDILFTTEAMKCANNGRQFENMIYLPDLETSSGAI 863
>SPAC26H5.04 |||vacuolar import and degradation protein
Vid28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 729
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 233 FDEWRTK-MNKRFSDFLPADLHFKNESQKKKVAKIIKEFYFGD 358
F R K + F D L +++ K+ S +KK +++ FGD
Sbjct: 457 FSPLREKFLTTNFIDTLISNISTKDSSLRKKTVWVLRHVVFGD 499
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 284 QGGNPKIVYSFLSSTRQRDLY 222
+ GNP ++YSFLS L+
Sbjct: 974 ESGNPDLIYSFLSIAGNSSLW 994
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 68 RPDSTFMFVPCVERDVGEEIILNDAPINL 154
RP+S+F+ P +++ LND INL
Sbjct: 185 RPNSSFVNSPFFPLPSSDDLFLNDRVINL 213
>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 392 VNYFSDVIFMTPALRSIKLLTEAGHDQV 475
V F D I ++ ALR IK L E+ HD V
Sbjct: 44 VGQFKDGIDIS-ALREIKFLRESRHDNV 70
>SPBC1703.03c |||armadillo repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 664
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +2
Query: 194 GFAN--MEGLMR-IDLFDEWRTKMNKRFSDFLPADLHFKN 304
GF N ME +++ I LFD + + SD LP++ +++N
Sbjct: 269 GFVNKKMESVVKGISLFDSFIPEALPILSDLLPSEENYRN 308
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,093,829
Number of Sequences: 5004
Number of extensions: 42447
Number of successful extensions: 119
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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