Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312B08f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0489 + 23404757-23404812,23406170-23406296,23406418-234064...    30   0.98 
01_01_0961 + 7556724-7556846,7557708-7557790,7557887-7558037,755...    28   4.0  
01_07_0179 - 41814886-41815074,41815172-41815222,41815365-418154...    27   6.9  
02_05_1262 + 35312313-35312343,35312840-35312886,35313614-353136...    27   9.1  

>02_04_0489 +
           23404757-23404812,23406170-23406296,23406418-23406487,
           23406997-23407102,23407185-23407296,23407792-23407914,
           23408017-23408176,23408300-23408376,23408474-23408526,
           23408700-23408754,23409049-23409683,23410412-23410733,
           23410838-23411146,23411468-23411470
          Length = 735

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 345 NSLIIFATFFFWLSFLKCKSA 283
           NS +  A FFFWL F  CK++
Sbjct: 2   NSFLFSALFFFWLLFCSCKAS 22


>01_01_0961 +
           7556724-7556846,7557708-7557790,7557887-7558037,
           7558584-7558616
          Length = 129

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 19/67 (28%), Positives = 34/67 (50%)
 Frame = +2

Query: 209 EGLMRIDLFDEWRTKMNKRFSDFLPADLHFKNESQKKKVAKIIKEFYFGDRSVNTDGVLN 388
           EGL+  D   + R   ++ +S     ++ ++N SQK  V   +K+ Y  +  V+T   L 
Sbjct: 32  EGLLFSDSLKDLRNLRSQLYSAAEYFEVFYRNNSQKSTVMTSLKD-YTVEALVSTVDHLG 90

Query: 389 YVNYFSD 409
           +V+Y  D
Sbjct: 91  FVSYKVD 97


>01_07_0179 -
           41814886-41815074,41815172-41815222,41815365-41815469,
           41815852-41815945,41816056-41816150,41816581-41816700,
           41816737-41816832,41817272-41817569,41817777-41817853,
           41818932-41819447
          Length = 546

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = +2

Query: 170 YPKVPMLIGFANMEGLMRIDLFDEWRTKMNKRFSDFLPADLHFKNESQKKKVAKIIKEF 346
           YP +  LIG +  E L+   LF+   T   K F D+ P +    + S  KK + I K F
Sbjct: 471 YPLLKKLIGESRAEDLVMEFLFEGVNTLGTKSFLDYFP-EYARDDGSVNKKRSMIGKSF 528


>02_05_1262 +
           35312313-35312343,35312840-35312886,35313614-35313660,
           35313740-35313842,35313924-35314691
          Length = 331

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/62 (22%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
 Frame = +2

Query: 161 NKQYPKVPMLIGFANMEGLMRIDLFDEWRTKMNKRFSDFLPADLHF-KNESQKKKVAKII 337
           N +  +V   I   + + +M  + F +WRT+  +R  +++P   +F K  ++KK++  ++
Sbjct: 256 NSELAEVTSAIETVSEKIIMEEEKFKKWRTENIRRKHNYIPFLFNFLKMLAEKKQLKPLV 315

Query: 338 KE 343
           ++
Sbjct: 316 EK 317


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,560,960
Number of Sequences: 37544
Number of extensions: 229999
Number of successful extensions: 500
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)