Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312B08f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11959| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.047
SB_9981| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.082
SB_37257| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_38136| Best HMM Match : COesterase (HMM E-Value=0)                  29   3.1  
SB_28326| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_53247| Best HMM Match : DDE (HMM E-Value=2.1e-08)                   28   4.1  
SB_51975| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_8609| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.4  
SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_46037| Best HMM Match : Pept_C1-like (HMM E-Value=0)                27   9.4  

>SB_11959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 34.7 bits (76), Expect = 0.047
 Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 5/127 (3%)
 Frame = +2

Query: 131 LNDAPINLLQNKQYPKVPMLIGFANMEGLMRIDLFDEWRTKMNKRFSDFLPAD--LHFKN 304
           L D+PI LL+  ++  V ++IG  + +G + I        KM    SD +P +  L+   
Sbjct: 124 LPDSPITLLREGKFNDVNVMIGTTDDDGTVMIP------EKMPFNISDGMPREFFLNAVK 177

Query: 305 ESQKKKVAKIIKEFYFGDRSVNTDGVLN---YVNYFSDVIFMTPALRSIKLLTEAGHDQV 475
            + +   +     F + D +  TD   N   YV+  +D +F  PA+ S       G    
Sbjct: 178 ATYQTPASPAAVTFQYTDWTNITDPYRNRRMYVDMMTDAMFTAPAVLSASAFLARG-CPT 236

Query: 476 YLYEYSF 496
           Y YE  +
Sbjct: 237 YFYEIQY 243


>SB_9981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 780

 Score = 33.9 bits (74), Expect = 0.082
 Identities = 35/155 (22%), Positives = 65/155 (41%), Gaps = 7/155 (4%)
 Frame = +2

Query: 65  DRPDSTFMFVPCVERDVGEEIILNDAPINLLQNKQYPKVPMLIGFANMEG---LMRIDLF 235
           D  D  F + P     V    +L D P +L +  ++  +P+++GF   +G   +  ++L 
Sbjct: 367 DAEDLAFYYDPFPAPHVDNYFLL-DTPRSLRKEGKFQPLPLMLGFTKHDGFHMISDLELP 425

Query: 236 DEWR-TKMNKRFSDFLPADLHFKNESQKKKVAKIIKEFYFGDRSVNTDGVLNY---VNYF 403
           D+   +   K     L   +   +     ++A  I EF +   +  TD    Y   V   
Sbjct: 426 DQLTPSYFRKGIERALQKFMKIHDPMTAVRLADAI-EFTYQPWAKTTDPDELYKALVALC 484

Query: 404 SDVIFMTPALRSIKLLTEAGHDQVYLYEYSFVDEN 508
           +D+  + P + S    +E  +   YL+EYS +  N
Sbjct: 485 TDIFIVAPTMESANFHSE--YSATYLFEYSHISNN 517


>SB_37257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 741

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +2

Query: 341 EFYFGDRSVNTDGVLN---YVNYFSDVIFMTPALRSIKLLTEAGHDQVYLYEYSFVDENV 511
           +F + D     + V N   Y++ +SD +F+ PA+     L  AGH   ++Y++    EN+
Sbjct: 345 KFEYQDHRDPNNSVTNRQLYMDLYSDSMFIAPAIFEANALASAGH-ATFMYKF----ENL 399

Query: 512 P 514
           P
Sbjct: 400 P 400


>SB_38136| Best HMM Match : COesterase (HMM E-Value=0)
          Length = 590

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 107 RDVGEEIILNDAPINLLQNKQYPKVPMLIGFANMEG 214
           R + + I L D P+NL +  ++   P + G  + EG
Sbjct: 302 RPIVDNIFLEDTPVNLRKANKFHPYPFIAGLTSEEG 337


>SB_28326| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 265

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +2

Query: 116 GEEIILNDAPINLLQNKQYPKVPMLIGFANMEGLMRIDLFDEWRTKMNKR 265
           GEE  +N  P   L NKQYP       FAN +  +R ++  E   K+N+R
Sbjct: 35  GEEAGVN--PETNLPNKQYPYTCRY--FANDKAWIRTEIMQEVLAKLNRR 80


>SB_53247| Best HMM Match : DDE (HMM E-Value=2.1e-08)
          Length = 265

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +2

Query: 116 GEEIILNDAPINLLQNKQYPKVPMLIGFANMEGLMRIDLFDEWRTKMNKR 265
           GEE  +N  P   L NKQYP       FAN +  +R ++  E   K+N+R
Sbjct: 35  GEEAGVN--PETNLPNKQYPYTCRY--FANDKAWIRTEIMQEVLAKLNRR 80


>SB_51975| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
 Frame = -2

Query: 346 EFFDNF--RYFLLL--AFVFEVQISREEIRKSFIHFCP-PLVKEIYTHEAFHV 203
           EF D    +YF L   A  ++   SREE+RK+F  F P P   +I T  AFH+
Sbjct: 121 EFLDKVQAKYFKLHPNAVAWKPGASREEMRKTFRPFDPSPQKIKIRTDAAFHL 173


>SB_8609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 985

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 131 LNDAPINLLQNKQYPKVPMLIGFANMEGLM 220
           L D P++LLQ   +  + ++IG  N E L+
Sbjct: 348 LTDTPLSLLQRGDFRNINVMIGVTNFECLL 377


>SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 799

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/62 (24%), Positives = 34/62 (54%)
 Frame = +2

Query: 104 ERDVGEEIILNDAPINLLQNKQYPKVPMLIGFANMEGLMRIDLFDEWRTKMNKRFSDFLP 283
           ++ V ++ +L +A  N+ +N Q PK P++    +++  + +    + +TK  K+ S  +P
Sbjct: 435 DKHVADDNLL-EAISNIPKNMQPPKTPLVRSLISIKRQLGMGRKKKTKTKKKKKTSHSIP 493

Query: 284 AD 289
            D
Sbjct: 494 RD 495


>SB_46037| Best HMM Match : Pept_C1-like (HMM E-Value=0)
          Length = 605

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 324 TFFFWLSFLKCKSAGRKSENRLFIFVL 244
           ++FF  +FL     G K ++RLF+F+L
Sbjct: 114 SYFFINAFLDLAKKGEKPDSRLFMFLL 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,723,481
Number of Sequences: 59808
Number of extensions: 274189
Number of successful extensions: 590
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)