Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312B08f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006621-2|AAK68262.2| 544|Caenorhabditis elegans Hypothetical ... 39 0.002
AF016450-3|AAB65992.3| 811|Caenorhabditis elegans Hypothetical ... 38 0.004
Z81142-9|CAB03501.2| 370|Caenorhabditis elegans Hypothetical pr... 33 0.12
AC006730-11|ABO16462.1| 327|Caenorhabditis elegans Hypothetical... 32 0.22
AF025454-9|AAK68371.1| 331|Caenorhabditis elegans Serpentine re... 31 0.38
AF099000-1|AAK71876.1| 334|Caenorhabditis elegans Serpentine re... 31 0.66
AF024501-2|AAB70367.2| 334|Caenorhabditis elegans Serpentine re... 31 0.66
AF025454-8|AAK68370.1| 334|Caenorhabditis elegans Serpentine re... 30 0.87
AF098997-8|AAC68719.3| 335|Caenorhabditis elegans Serpentine re... 29 1.5
L00665-1|AAA28148.1| 537|Caenorhabditis elegans protein ( Caeno... 29 2.0
Z46787-2|CAA86740.1| 262|Caenorhabditis elegans Hypothetical pr... 29 2.7
AF016681-12|AAB66170.2| 325|Caenorhabditis elegans Serpentine r... 29 2.7
U80842-3|AAB37947.1| 325|Caenorhabditis elegans Serpentine rece... 28 3.5
AF022977-3|AAB88609.1| 554|Caenorhabditis elegans Hypothetical ... 28 4.7
AF016664-10|AAB66064.3| 330|Caenorhabditis elegans Serpentine r... 28 4.7
U56965-5|AAB52668.1| 478|Caenorhabditis elegans Hypothetical pr... 27 6.2
AF303267-1|AAG50225.1| 478|Caenorhabditis elegans kynureninase ... 27 6.2
>AC006621-2|AAK68262.2| 544|Caenorhabditis elegans Hypothetical
protein C52A10.2 protein.
Length = 544
Score = 39.1 bits (87), Expect = 0.002
Identities = 27/119 (22%), Positives = 49/119 (41%)
Frame = +2
Query: 164 KQYPKVPMLIGFANMEGLMRIDLFDEWRTKMNKRFSDFLPADLHFKNESQKKKVAKIIKE 343
K+ PK+ ++ EGL D + +T + P + + E K+ +K
Sbjct: 318 KEAPKLGAIVSIGEYEGLGFEDFYAGQKTPQQMLSAALGPEVVRNREEVVKRAAESYLKN 377
Query: 344 FYFGDRSVNTDGVLNYVNYFSDVIFMTPALRSIKLLTEAGHDQVYLYEYSFVDENVPVV 520
G + V F D F A +++ L + G+ VYLY +++ + N P+V
Sbjct: 378 ---GGNENEENIAKTLVEIFGDYYFSVGAFDTVRSLVKYGNT-VYLYSFNYFNPNTPIV 432
>AF016450-3|AAB65992.3| 811|Caenorhabditis elegans Hypothetical
protein B0238.13 protein.
Length = 811
Score = 37.9 bits (84), Expect = 0.004
Identities = 29/119 (24%), Positives = 51/119 (42%)
Frame = +2
Query: 164 KQYPKVPMLIGFANMEGLMRIDLFDEWRTKMNKRFSDFLPADLHFKNESQKKKVAKIIKE 343
K+ PK+ ++ EGL D + +T + P + + E KK +K
Sbjct: 644 KEAPKLGAIVSIGEYEGLGFEDFYAGQKTPQQMLSAALGPDVVKNREEVVKKAEESYLKN 703
Query: 344 FYFGDRSVNTDGVLNYVNYFSDVIFMTPALRSIKLLTEAGHDQVYLYEYSFVDENVPVV 520
G+ N L V + D F A +++ L + G+ VYLY +++ + N P+V
Sbjct: 704 AGNGNEK-NVAKTL--VEIYGDYYFSVGAFDTVRSLVKYGNT-VYLYSFNYFNPNTPIV 758
>Z81142-9|CAB03501.2| 370|Caenorhabditis elegans Hypothetical
protein ZK1037.1 protein.
Length = 370
Score = 33.1 bits (72), Expect = 0.12
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -2
Query: 421 HEYNITKIVHIIQNAISVH*T-ITKIEFFDNFRYFLLLAFVFEVQISREEIRKSFIHFCP 245
H + K V ++ + + T +T I+FFDN +Y LL E I R E + +F
Sbjct: 253 HLVSRLKSVEVLFGGLLISRTSLTTIDFFDNLKYILLHTSSMEEAI-RVEYNVNLTNFLF 311
Query: 244 PLVKEIY 224
P +K IY
Sbjct: 312 PSLKRIY 318
>AC006730-11|ABO16462.1| 327|Caenorhabditis elegans Hypothetical
protein Y27F2A.11 protein.
Length = 327
Score = 32.3 bits (70), Expect = 0.22
Identities = 17/47 (36%), Positives = 29/47 (61%)
Frame = -2
Query: 415 YNITKIVHIIQNAISVH*TITKIEFFDNFRYFLLLAFVFEVQISREE 275
Y+I ++ +I + S++ + K DNFRYFLL F+VQ++ E+
Sbjct: 16 YHIIGVISMIVDLFSIYLILFKSNKLDNFRYFLL---NFQVQLNFEK 59
>AF025454-9|AAK68371.1| 331|Caenorhabditis elegans Serpentine
receptor, class i protein61 protein.
Length = 331
Score = 31.5 bits (68), Expect = 0.38
Identities = 16/59 (27%), Positives = 34/59 (57%)
Frame = -2
Query: 415 YNITKIVHIIQNAISVH*TITKIEFFDNFRYFLLLAFVFEVQISREEIRKSFIHFCPPL 239
Y++ ++ ++ ++ S++ + + E DNFRYFLL F++ + +I +F+ PL
Sbjct: 16 YHVIGVISLLFDSFSIYLILFRSEKIDNFRYFLL---NFQLACTVTDIHLTFLTQAIPL 71
>AF099000-1|AAK71876.1| 334|Caenorhabditis elegans Serpentine
receptor, class i protein60 protein.
Length = 334
Score = 30.7 bits (66), Expect = 0.66
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = -2
Query: 415 YNITKIVHIIQNAISVH*TITKIEFFDNFRYFLL 314
Y++ ++ I+ ++ S++ + + + DNFRYFLL
Sbjct: 16 YHVIGVISILFDSFSIYLVLFRSDKIDNFRYFLL 49
>AF024501-2|AAB70367.2| 334|Caenorhabditis elegans Serpentine
receptor, class i protein63 protein.
Length = 334
Score = 30.7 bits (66), Expect = 0.66
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -2
Query: 415 YNITKIVHIIQNAISVH*TITKIEFFDNFRYFLL 314
Y++ ++ +I ++ S++ + K DNFRYFLL
Sbjct: 16 YHVIGVISLIFDSFSIYLILFKSSKIDNFRYFLL 49
>AF025454-8|AAK68370.1| 334|Caenorhabditis elegans Serpentine
receptor, class i protein62 protein.
Length = 334
Score = 30.3 bits (65), Expect = 0.87
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -2
Query: 415 YNITKIVHIIQNAISVH*TITKIEFFDNFRYFLL 314
Y++ I+ ++ ++ S++ + K DNFRYFLL
Sbjct: 16 YHVIGIISLLFDSFSIYLILFKSSKIDNFRYFLL 49
>AF098997-8|AAC68719.3| 335|Caenorhabditis elegans Serpentine
receptor, class i protein54 protein.
Length = 335
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -2
Query: 415 YNITKIVHIIQNAISVH*TITKIEFFDNFRYFLL 314
++I + +I + S++ + K E DNFRYFLL
Sbjct: 16 FHIIGSISLIADIFSIYLILFKSEKIDNFRYFLL 49
>L00665-1|AAA28148.1| 537|Caenorhabditis elegans protein (
Caenorhabditis eleganstransposable element Tc4, complete
cds. ).
Length = 537
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 254 MNKRFSDFLPADLHFKNESQK--KKVAKIIKEFYFGDRSVNTDGVLNYVNY 400
+++ F + LP++ QK +A IIKE Y+GD SV L Y
Sbjct: 12 LHRHFPNPLPSNPSISRHEQKVADHLASIIKESYYGDTSVEESEYLVQEEY 62
>Z46787-2|CAA86740.1| 262|Caenorhabditis elegans Hypothetical
protein C16C10.2 protein.
Length = 262
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 236 DEWRTKMNKRFSDFLPAD-LHFKNESQKKKVAKIIKEFYFGDRSVNTDG 379
+E T++ K+ + + FK +KKK+ ++ E +F D S+N G
Sbjct: 90 EETETQIQKKLGSLKDLEYVKFKLNEEKKKIDEMKGELHFADSSLNGKG 138
>AF016681-12|AAB66170.2| 325|Caenorhabditis elegans Serpentine
receptor, class i protein47 protein.
Length = 325
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = -2
Query: 415 YNITKIVHIIQNAISVH*TITKIEFFDNFRYFLLLAFVFEVQISREEIRKSFIHFCPPLV 236
+NI + N ++ I K F+NFR+F+L VF+V + ++ +FI PL+
Sbjct: 15 FNIVAFISFFLNFTTILLIIFKSYKFNNFRFFVL---VFQVTCTITDLHLNFIMQPAPLM 71
>U80842-3|AAB37947.1| 325|Caenorhabditis elegans Serpentine
receptor, class i protein48 protein.
Length = 325
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -2
Query: 415 YNITKIVHIIQNAISVH*TITKIEFFDNFRYFLLLAFVFEVQISREEIRKSFI 257
+NI + N ++ I K F+NFR+F+L VF+V + ++ +FI
Sbjct: 15 FNIVSFISFFLNCTTILLIIFKSYKFNNFRFFVL---VFQVTCTITDLHINFI 64
>AF022977-3|AAB88609.1| 554|Caenorhabditis elegans Hypothetical
protein ZK994.1 protein.
Length = 554
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 125 IILNDAPINLLQNKQYPKVPMLIGFANMEGLMRIDLFDE 241
++L D P +L++ + K+P+LIG E L + D+
Sbjct: 307 VLLRDEPRRILESGNFKKIPLLIGTVPHEVLYTRYMIDK 345
>AF016664-10|AAB66064.3| 330|Caenorhabditis elegans Serpentine
receptor, class i protein37 protein.
Length = 330
Score = 27.9 bits (59), Expect = 4.7
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = -2
Query: 415 YNITKIVHIIQNAISVH*TITKIEFFDNFRYFLLLAFVFEVQISREEIRKSFIHFCPPLV 236
Y + +I N ++ I K + DNFRY+LL VF++ + +I + + PL
Sbjct: 14 YYLIGSTSLILNLFTIFLVIFKSDKIDNFRYYLL---VFQISCTITDIHTTLLLQPFPLP 70
Query: 235 KEIYTH 218
I H
Sbjct: 71 PMIAGH 76
>U56965-5|AAB52668.1| 478|Caenorhabditis elegans Hypothetical
protein C15H9.7 protein.
Length = 478
Score = 27.5 bits (58), Expect = 6.2
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 15/81 (18%)
Frame = +2
Query: 269 SDFLPADLHFKNESQKKKVAKIIKEFYF------GDRSVNTDGVLNYVN---------YF 403
S P+D H+ ESQ + + +++ G+ ++ T+ +L+Y+ +F
Sbjct: 175 SKAFPSD-HYAIESQIRLKGRTVQDSMVCLEPREGEETLRTEDILDYIEKNGDEIAIVFF 233
Query: 404 SDVIFMTPALRSIKLLTEAGH 466
S + + T L ++ +TEAGH
Sbjct: 234 SGIQYYTGQLFDMRAITEAGH 254
>AF303267-1|AAG50225.1| 478|Caenorhabditis elegans kynureninase
protein.
Length = 478
Score = 27.5 bits (58), Expect = 6.2
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 15/81 (18%)
Frame = +2
Query: 269 SDFLPADLHFKNESQKKKVAKIIKEFYF------GDRSVNTDGVLNYVN---------YF 403
S P+D H+ ESQ + + +++ G+ ++ T+ +L+Y+ +F
Sbjct: 175 SKAFPSD-HYAIESQIRLKGRTVQDSMVCLEPREGEETLRTEDILDYIEKNGDEIAIVFF 233
Query: 404 SDVIFMTPALRSIKLLTEAGH 466
S + + T L ++ +TEAGH
Sbjct: 234 SGIQYYTGQLFDMRAITEAGH 254
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,396,987
Number of Sequences: 27780
Number of extensions: 229517
Number of successful extensions: 616
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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