Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312B08f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17180.1 68414.m02094 glutathione S-transferase, putative Sec...    33   0.12 
At1g79880.1 68414.m09333 La domain-containing protein contains P...    31   0.62 
At2g22300.1 68415.m02646 ethylene-responsive calmodulin-binding ...    27   5.8  
At1g16370.1 68414.m01958 transporter-related low similarity to o...    27   5.8  
At4g20040.1 68417.m02933 expressed protein C70DMY30S                   27   7.7  

>At1g17180.1 68414.m02094 glutathione S-transferase, putative Second
           of three repeated putative glutathione transferases. 72%
           identical to glutathione transferase [Arabidopsis
           thaliana] (gi|4006934). Location of ests 191A10T7
           (gb|R90188) and 171N13T7 (gb|R65532)
          Length = 221

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
 Frame = +2

Query: 101 VERDVGEEIILNDAPINLLQNKQYPKVPMLIGFAN--MEGLMRIDLFDE-WRTKMNKRFS 271
           V+ D  E+ + N +PI L  N  + K+P+LI   N   E L++I+  DE W +K     S
Sbjct: 28  VKFDYREQDLWNKSPILLEMNPVHKKIPVLIHNGNPVCESLIQIEYIDEVWPSKTPLLPS 87

Query: 272 D-FLPADLHFKNESQKKKV 325
           D +  A   F  +   KKV
Sbjct: 88  DPYQRAQAKFWGDFIDKKV 106


>At1g79880.1 68414.m09333 La domain-containing protein contains Pfam
           profile PF05383: La domain; similar to putative protein
           GB:CAA18589 [Arabidopsis thaliana]
          Length = 399

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 296 FKNESQKKKVAKIIKEFYFGDRSVNTDGVLN 388
           F  E+ KK + ++  EFYF D ++ TDG LN
Sbjct: 5   FNEETAKKLLTQV--EFYFSDSNLPTDGFLN 33


>At2g22300.1 68415.m02646 ethylene-responsive calmodulin-binding
           protein, putative (SR1) identical to partial sequence of
           ethylene-induced calmodulin-binding protein GI:11545505
           from [Arabidopsis thaliana]; contains Pfam profiles
           PF03859: CG-1 domain, PF00612: IQ calmodulin-binding
           motif, and PF00023: Ankyrin repeat
          Length = 1032

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
 Frame = +2

Query: 116 GEEIILNDAPINLLQNKQYP-----KVPMLIGFANMEGLMRIDLFDEWRTK 253
           G+++ LN A  NL  N++ P     K  +L G    EGL ++D F+ W +K
Sbjct: 357 GQDMELN-AISNLASNEKAPYLSTMKQHLLHGALGEEGLKKMDSFNRWMSK 406


>At1g16370.1 68414.m01958 transporter-related low similarity to
           organic cation transporter OCTN1 from [Homo sapiens]
           GI:2605501, [Mus musculus] GI:4126605, [Rattus
           norvegicus] GI:5679326; contains Pfam profile PF00083:
           major facilitator superfamily protein
          Length = 521

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = -3

Query: 336 IIFATFFFWLSFLKCKSAGRKSENRLFIFVLHSSKRSIRMRPSMLAKPISIGTFGY 169
           +IF+T  +  +FLK      +S+   +  VL S + S R RP     P ++   G+
Sbjct: 169 VIFSTNVWIYTFLKFIIGFSRSQTWSYALVLISERVSTRWRPRATMIPFTLFVLGF 224


>At4g20040.1 68417.m02933 expressed protein C70DMY30S
          Length = 483

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
 Frame = +2

Query: 263 RFSDFLPADLHFKN--ESQKKKVAKIIKEFYFGDRSVNTDGVLNYVNYFSDVIF 418
           R S+  P D H      S  KK  K+  E  F D+   + G+      F DV+F
Sbjct: 147 RASELFPGDRHLVELVASNAKKPMKMSPEESFSDQKDQSSGIFYEDVTFQDVLF 200


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,487,853
Number of Sequences: 28952
Number of extensions: 202113
Number of successful extensions: 440
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)