Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312B07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...   122   4e-29
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi...    28   0.97 
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    27   1.7  
SPBC27.01c |||secretory pathway protein Pga2 |Schizosaccharomyce...    27   2.2  
SPAC926.02 |||conserved fungal protein|Schizosaccharomyces pombe...    25   5.2  
SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy...    25   6.8  
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat...    25   9.0  
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po...    25   9.0  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   9.0  

>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score =  122 bits (293), Expect = 4e-29
 Identities = 58/107 (54%), Positives = 72/107 (67%)
 Frame = -2

Query: 520 DGKTVEAEAAHGTVTRHFRFYQQGKETSTNPIASIFAWTRGLLHRAKLDNNDALKNFAET 341
           +G+T E+EAAHGTV RH+  Y +GK+TSTN IASIFAWTRGL HR +LD N+ L  FA  
Sbjct: 309 NGRTFESEAAHGTVQRHYMQYLKGKKTSTNSIASIFAWTRGLAHRGRLDGNERLVKFANA 368

Query: 340 LEKVCIETIESGIMTKDLAICIKGMNNVKRSDYYETFEFMDKLAENL 200
           LE  C+  +E GIMTKDL +  K  N      Y +TFEF+D +   L
Sbjct: 369 LEHACVRCVEKGIMTKDLYLLSKSPNG-----YVDTFEFLDAVKSEL 410


>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 308

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -3

Query: 153 IFNICYINLQYFIVME*GYLIFLA*KLIAFIYFFRL-FISYKYIIFQN 13
           IFN+  I  Q  +  E   L F A  + AFI FF   F+SYK +   N
Sbjct: 216 IFNVMLIQFQRILFAESPILTFTA-SVAAFIEFFLSGFLSYKSLFVWN 262


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 17/73 (23%), Positives = 33/73 (45%)
 Frame = -2

Query: 490 HGTVTRHFRFYQQGKETSTNPIASIFAWTRGLLHRAKLDNNDALKNFAETLEKVCIETIE 311
           H T+   +  Y+ G+ T+       + W   L HRA +  ++  K    T+E+  +E I 
Sbjct: 561 HLTLLNVYHAYKSGEGTAD------WCWNHFLSHRALISADNVRKQLRRTMERQEVELIS 614

Query: 310 SGIMTKDLAICIK 272
           +    K+  + I+
Sbjct: 615 TPFDDKNYYVNIR 627


>SPBC27.01c |||secretory pathway protein Pga2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 132

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = -2

Query: 520 DGKTVEAEAAHGTVTR-HFRFYQQGKETSTNPIASIFAWTRGLLHRAKLDNNDALKN 353
           DG T++ E  HGT  + H  F    +E   NP A  F W      R +    +  KN
Sbjct: 56  DG-TLDPEMTHGTKPKEHGEFDTDDEEEEENPDAE-FRWGYSARRRIRKQREEYFKN 110


>SPAC926.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 443

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -2

Query: 376 DNNDALKNFAETLEKVCIETIESG---IMTK 293
           D  DA  +FAETL   C+ T ES    IMT+
Sbjct: 301 DKADAYIDFAETLLDSCVSTEESASIEIMTR 331


>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 483 LLHVISDSISKEKRHPPI 430
           +LHVISD++S  +R  P+
Sbjct: 231 ILHVISDTLSSPRRRNPL 248


>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
           subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 308

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 375 SNLARCNKPLVQAKIEAIG 431
           SNL   NKP +QA I  +G
Sbjct: 178 SNLGHINKPSIQALIHGLG 196


>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 412

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 300 IIPDSIVSMQTFSRVSAKFFKASLLSNLA 386
           ++P+S VS QT S     FF A L S  A
Sbjct: 182 VVPESEVSFQTISSRVDNFFAAPLPSEQA 210


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 479  YTSFQILSARKRDIHQSNCFNFCLD 405
            YT+F+ +S+ K D H +  +N  +D
Sbjct: 1699 YTAFECMSSLKSDSHDTEEYNDLMD 1723


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,937,226
Number of Sequences: 5004
Number of extensions: 35863
Number of successful extensions: 77
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)