Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312B07f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)                     135   2e-32
SB_26442| Best HMM Match : Iso_dh (HMM E-Value=3.6e-37)                67   9e-12
SB_30064| Best HMM Match : SPC22 (HMM E-Value=5.5)                     29   3.1  
SB_57344| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_18985| Best HMM Match : TUDOR (HMM E-Value=8.3e-37)                 27   9.4  
SB_17117| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)
          Length = 644

 Score =  135 bits (327), Expect = 2e-32
 Identities = 59/85 (69%), Positives = 71/85 (83%)
 Frame = -2

Query: 520 DGKTVEAEAAHGTVTRHFRFYQQGKETSTNPIASIFAWTRGLLHRAKLDNNDALKNFAET 341
           DGKT+E+EAAHGTVTRH+R +Q+G ETSTNPIASIFAWT+GL HRAKLD N  LK F + 
Sbjct: 273 DGKTIESEAAHGTVTRHYREHQKGNETSTNPIASIFAWTQGLSHRAKLDGNPELKKFCKA 332

Query: 340 LEKVCIETIESGIMTKDLAICIKGM 266
           LEK C++T++ G MTKDLA CI G+
Sbjct: 333 LEKACVDTVDQGKMTKDLAACIYGL 357


>SB_26442| Best HMM Match : Iso_dh (HMM E-Value=3.6e-37)
          Length = 296

 Score = 66.9 bits (156), Expect = 9e-12
 Identities = 28/33 (84%), Positives = 32/33 (96%)
 Frame = -2

Query: 520 DGKTVEAEAAHGTVTRHFRFYQQGKETSTNPIA 422
           DGKTVE+EAAHGTVTRH+R +QQGKETSTNP+A
Sbjct: 240 DGKTVESEAAHGTVTRHYRMHQQGKETSTNPVA 272


>SB_30064| Best HMM Match : SPC22 (HMM E-Value=5.5)
          Length = 197

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +3

Query: 294 LVIIPDSIVSMQTFSRVSAKFFKASLLSNLARCNKPLVQAKIEAIGLVDVSFPC 455
           L+ IP+SIV +   SR  +  F  +++  +AR N+ L+      +   D  F C
Sbjct: 130 LIPIPNSIVYIGILSRSDSLNFDMTIVVFIARENRFLILQNFRYLSFPDTIFSC 183


>SB_57344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 488 WHCYTSFQILSARKRDIHQSNCF 420
           W+C+T+F ILS+ KR  ++ + F
Sbjct: 182 WNCHTNFVILSSCKRPTYRCDQF 204


>SB_18985| Best HMM Match : TUDOR (HMM E-Value=8.3e-37)
          Length = 1219

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 520  DGKTVEAEAAHGTVTRHFRFYQQGKETSTNPIASIFAWTR 401
            +G TV A+A+  T  +      + KE  T PI S+F  TR
Sbjct: 1125 NGSTVFAKASDDTDAKPETASSERKEDVTRPITSVFIATR 1164


>SB_17117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = -2

Query: 472 HFRFYQQGKETSTNPIASIFAWTRGLLHRAKLDNNDALKNFAETLEKVCIETIESGIM 299
           H+R Y      S  P   I      ++HR    ++   +++A +L  +CI  I + IM
Sbjct: 266 HYRHYASSSPLSALPSLCITLIITVIMHRLHHHHHHHYRHYASSLPSLCIIIIITVIM 323


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,854,285
Number of Sequences: 59808
Number of extensions: 241760
Number of successful extensions: 561
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)