Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312B07f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68343-3|CAA92778.1| 412|Caenorhabditis elegans Hypothetical pr... 171 3e-43
Z81479-7|CAB03943.1| 435|Caenorhabditis elegans Hypothetical pr... 142 2e-34
Z70307-9|CAE54887.1| 246|Caenorhabditis elegans Hypothetical pr... 32 0.22
Z70307-8|CAA94333.2| 248|Caenorhabditis elegans Hypothetical pr... 32 0.22
AL032620-1|CAA21487.1| 354|Caenorhabditis elegans Hypothetical ... 28 3.5
AF025469-2|AAG00033.2| 470|Caenorhabditis elegans Taf (tbp-asso... 28 3.5
AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical ... 28 4.7
>Z68343-3|CAA92778.1| 412|Caenorhabditis elegans Hypothetical
protein F59B8.2 protein.
Length = 412
Score = 171 bits (415), Expect = 3e-43
Identities = 80/109 (73%), Positives = 92/109 (84%), Gaps = 2/109 (1%)
Frame = -2
Query: 520 DGKTVEAEAAHGTVTRHFRFYQQGKETSTNPIASIFAWTRGLLHRAKLDNNDALKNFAET 341
DGKTVEAEAAHGTVTRH+R +Q+G+ETSTNPIASIFAW+RGL HRA LD N AL+ FA
Sbjct: 298 DGKTVEAEAAHGTVTRHYRMHQKGQETSTNPIASIFAWSRGLAHRATLDKNSALETFANN 357
Query: 340 LEKVCIETIESGIMTKDLAICIKGMN--NVKRSDYYETFEFMDKLAENL 200
LE VCIET+E+G +TKDLAIC+KG N V R+DY TFEF+DKLAENL
Sbjct: 358 LEAVCIETMEAGFLTKDLAICVKGGNASAVTRTDYLNTFEFLDKLAENL 406
>Z81479-7|CAB03943.1| 435|Caenorhabditis elegans Hypothetical
protein C34F6.8 protein.
Length = 435
Score = 142 bits (343), Expect = 2e-34
Identities = 66/104 (63%), Positives = 80/104 (76%), Gaps = 1/104 (0%)
Frame = -2
Query: 520 DGKTVEAEAAHGTVTRHFRFYQQGKETSTNPIASIFAWTRGLLHRAKLDNNDALKNFAET 341
DGKT+EAEAAHGTVTRH+R +Q+G TSTNPIASIFAWTRGL HR LDNN+ALK F+ T
Sbjct: 321 DGKTIEAEAAHGTVTRHYREHQKGNSTSTNPIASIFAWTRGLHHRGVLDNNEALKTFSLT 380
Query: 340 LEKVCIETIESGIMTKDLAICIKG-MNNVKRSDYYETFEFMDKL 212
LEK CI+T+E G MTKDL+ICI G ++ Y T +F+ +
Sbjct: 381 LEKACIDTVEEGKMTKDLSICIHGTKKGTEKGAYLITEDFLSAI 424
>Z70307-9|CAE54887.1| 246|Caenorhabditis elegans Hypothetical
protein C39E9.8b protein.
Length = 246
Score = 32.3 bits (70), Expect = 0.22
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Frame = -2
Query: 442 TSTNPIASIFAWTRGLLHRAKLDNNDALKNFAETLEKVCIETIESGIMTKDLAI-CIKGM 266
T+T+PI SI +L+RAKL ++ + + ++VC+E E + KD + C +
Sbjct: 21 TATDPIDSISTQGADILNRAKL-TGQTVRQCSCSEQRVCVE--EMKLQAKDCTVPCFQKF 77
Query: 265 NNV--KRSDYYETFEFMDKLAEN 203
+++ + +D + F+ D + E+
Sbjct: 78 SSITSRPNDLKKCFDEKDNILED 100
>Z70307-8|CAA94333.2| 248|Caenorhabditis elegans Hypothetical
protein C39E9.8a protein.
Length = 248
Score = 32.3 bits (70), Expect = 0.22
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Frame = -2
Query: 442 TSTNPIASIFAWTRGLLHRAKLDNNDALKNFAETLEKVCIETIESGIMTKDLAI-CIKGM 266
T+T+PI SI +L+RAKL ++ + + ++VC+E E + KD + C +
Sbjct: 21 TATDPIDSISTQGADILNRAKL-TGQTVRQCSCSEQRVCVE--EMKLQAKDCTVPCFQKF 77
Query: 265 NNV--KRSDYYETFEFMDKLAEN 203
+++ + +D + F+ D + E+
Sbjct: 78 SSITSRPNDLKKCFDEKDNILED 100
>AL032620-1|CAA21487.1| 354|Caenorhabditis elegans Hypothetical
protein Y36E3A.1 protein.
Length = 354
Score = 28.3 bits (60), Expect = 3.5
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Frame = -2
Query: 451 GKETSTNPIASIFAWTRGLLHRAKLDNNDALKNFAETLEKVCIETIESGIMTKDLAICIK 272
G S PI S+F + + L+H+ ++ +DA+K E L+K ++ G ++A I+
Sbjct: 255 GIGNSILPIQSLFHFEKFLIHKLRITVDDAIK-IKEMLDKP--NNLKDGYFRVEIANKIE 311
Query: 271 -----GMNNVKRSD----YYETFEFMDKLAENLKVAL 188
G + + R+ YY+T E + L + + +AL
Sbjct: 312 LARVFGTDYIDRNGEITMYYQTEERLKYLIKFIPIAL 348
>AF025469-2|AAG00033.2| 470|Caenorhabditis elegans Taf
(tbp-associated transcriptionfactor) family protein 6.1
protein.
Length = 470
Score = 28.3 bits (60), Expect = 3.5
Identities = 22/74 (29%), Positives = 32/74 (43%)
Frame = -2
Query: 448 KETSTNPIASIFAWTRGLLHRAKLDNNDALKNFAETLEKVCIETIESGIMTKDLAICIKG 269
K T ++ S R + AK+D LK T+E I T+E I KD+ G
Sbjct: 189 KNTPSSSTTSSLQMFRDAVKTAKIDQKVGLK--PSTIE---ILTVEQQIFMKDIITVCMG 243
Query: 268 MNNVKRSDYYETFE 227
++ KR + T E
Sbjct: 244 QDDKKRHEALYTLE 257
>AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical
protein Y80D3A.8 protein.
Length = 1293
Score = 27.9 bits (59), Expect = 4.7
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -2
Query: 466 RFYQQG-KETSTNPIASIFAWTRGLLHRAKLDNNDALKNFAETLEKVCIETIESGIMTKD 290
R Y++ KE I I WT+ + + DN+ K + T+E V + TI+ +T+
Sbjct: 966 RLYEEKEKEQRKKQIKGIEKWTKSMDFK---DNHKTAKFYNTTIENVNVTTIDKDHITES 1022
Query: 289 LA 284
A
Sbjct: 1023 YA 1024
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,632,674
Number of Sequences: 27780
Number of extensions: 197620
Number of successful extensions: 441
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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