Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312B07f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65930.1 68414.m07481 isocitrate dehydrogenase, putative / NA...   144   2e-35
At1g54340.1 68414.m06195 isocitrate dehydrogenase, putative / NA...   142   1e-34
At5g14590.1 68418.m01711 isocitrate dehydrogenase, putative / NA...   140   7e-34
At5g48550.1 68418.m06003 F-box family protein-related similar to...    29   1.9  
At5g39420.1 68418.m04775 protein kinase family protein contains ...    27   7.7  

>At1g65930.1 68414.m07481 isocitrate dehydrogenase, putative / NADP+
           isocitrate dehydrogenase, putative strong similarity to
           isocitrate dehydrogenase SP|Q40345 from [Medicago
           sativa]
          Length = 410

 Score =  144 bits (350), Expect = 2e-35
 Identities = 71/111 (63%), Positives = 83/111 (74%)
 Frame = -2

Query: 520 DGKTVEAEAAHGTVTRHFRFYQQGKETSTNPIASIFAWTRGLLHRAKLDNNDALKNFAET 341
           DGKT+EAEAAHGTVTRHFR +Q+G ETSTN IASIFAWTRGL HRAKLD+N  L +F E 
Sbjct: 299 DGKTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWTRGLAHRAKLDDNAKLLDFTEK 358

Query: 340 LEKVCIETIESGIMTKDLAICIKGMNNVKRSDYYETFEFMDKLAENLKVAL 188
           LE  C+ T+ESG MTKDLA+ I G + + R  Y  T EF+D +A  LK  L
Sbjct: 359 LEAACVGTVESGKMTKDLALIIHG-SKLSRDTYLNTEEFIDAVAAELKERL 408


>At1g54340.1 68414.m06195 isocitrate dehydrogenase, putative / NADP+
           isocitrate dehydrogenase, putative strong similarity to
           NADP-isocitrate dehydrogenase GI:5764653 from [Citrus
           limon]; Nicotiana tabacum SP|P50218
          Length = 416

 Score =  142 bits (344), Expect = 1e-34
 Identities = 69/108 (63%), Positives = 83/108 (76%)
 Frame = -2

Query: 520 DGKTVEAEAAHGTVTRHFRFYQQGKETSTNPIASIFAWTRGLLHRAKLDNNDALKNFAET 341
           DGKT+EAEAAHGTVTRH+R +Q+G ETSTN IASIFAW+RGL HRAKLD+N AL ++ E 
Sbjct: 300 DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDSNAALLSYTEK 359

Query: 340 LEKVCIETIESGIMTKDLAICIKGMNNVKRSDYYETFEFMDKLAENLK 197
           LE  C+ T+ESG MTKDLA+ I G   V+R  Y  T EF+D +A  LK
Sbjct: 360 LEAACMGTVESGKMTKDLALLIHGA-KVRRDQYVNTEEFIDAVAWELK 406


>At5g14590.1 68418.m01711 isocitrate dehydrogenase, putative / NADP+
           isocitrate dehydrogenase, putative strong similarity to
           isocitrate dehydrogenase (NADP+) [Nicotiana tabacum]
           GI:3021512; contains Pfam domain PF00180: dehydrogenase,
           isocitrate/isopropylmalate family
          Length = 485

 Score =  140 bits (338), Expect = 7e-34
 Identities = 67/108 (62%), Positives = 82/108 (75%)
 Frame = -2

Query: 520 DGKTVEAEAAHGTVTRHFRFYQQGKETSTNPIASIFAWTRGLLHRAKLDNNDALKNFAET 341
           DGKT+E+EAAHGTVTRHFR +Q+G+ETSTN IASIFAWTRGL HRAKLD N+ L +F + 
Sbjct: 370 DGKTLESEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNEKLMDFVKK 429

Query: 340 LEKVCIETIESGIMTKDLAICIKGMNNVKRSDYYETFEFMDKLAENLK 197
           LE  C+ T+E+G MTKDLA+ I G   V R  +  T EF+D +A  LK
Sbjct: 430 LESSCVNTVETGKMTKDLALLIHG-PKVSRDLFLNTEEFIDAVASKLK 476


>At5g48550.1 68418.m06003 F-box family protein-related similar to
           unknown protein (gb AAF19735.1); contains TIGRFAM
           TIGR01640 : F-box protein interaction domain
          Length = 427

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = -2

Query: 454 QGKETSTNPIASIFAWTRGLLHRAKLDNNDALKNFAET-LEKVCIETIESGIMTKDLAIC 278
           +G + STN +  + AW  GLL R          NF  T +E +  E    G++++D  I 
Sbjct: 276 RGHDWSTNRLHVVGAWKEGLLLRIWDSTVCIYLNFKTTRMEYIGFENEIQGLISRDFIIS 335

Query: 277 IKGMNNVKRSDYYE 236
                 ++   YY+
Sbjct: 336 YTPNYLLRLKTYYD 349


>At5g39420.1 68418.m04775 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 644

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 514 KTVEAEAAHGTVTRHFRFYQQGKETSTNPIASIFAW 407
           K +  EA+  T T H  +Y+      T   AS FAW
Sbjct: 462 KNIPNEASRATTTTHGNYYKVSDLPMTTGPASGFAW 497


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,858,973
Number of Sequences: 28952
Number of extensions: 178535
Number of successful extensions: 408
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)