Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312B05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce...    31   0.10 
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    25   6.8  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   6.8  

>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 292

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
 Frame = +2

Query: 203 MPPKKPS---GASXXXXXXXXXXVIEDKTFGLKNK-KGAKQQKFIQQVEKQVKSGGVHPV 370
           MPPKK +   G               D TFGLKNK +  K Q  I+Q+E+   + G    
Sbjct: 1   MPPKKAAKGKGDPGKAAKKDPTKKAADATFGLKNKNRSTKVQAKIRQIEQNAAASGSKDA 60

Query: 371 KPVE 382
           K  E
Sbjct: 61  KRQE 64


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 311 QQKFIQQVEKQVKSGGVHPVKPVED 385
           ++ +IQQ++ Q+KS  VH     E+
Sbjct: 593 ERSYIQQLQSQIKSQSVHHENAAEE 617


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 285  PNVLSSITFSFFFCSVFLLAPL 220
            P VLS+I   FFFC   +L P+
Sbjct: 1486 PLVLSAIIAFFFFCLGIMLRPI 1507


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,802,798
Number of Sequences: 5004
Number of extensions: 31106
Number of successful extensions: 50
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)