Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312B05f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1254 + 35761046-35761162,35761332-35761416,35761877-357620...    46   2e-05
03_02_0790 - 11212540-11212698,11212777-11212873,11212974-112130...    29   2.3  

>01_06_1254 +
           35761046-35761162,35761332-35761416,35761877-35762017,
           35762118-35762206,35762519-35762701,35763509-35763697,
           35763808-35763938,35764023-35764125,35765123-35765308
          Length = 407

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 40/108 (37%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
 Frame = +2

Query: 203 MPPKKPSGASXXXXXXXXXXVIEDKTFGLKNKKGAKQ-QKFIQQVEKQVKSGGVHPVKPV 379
           MPPKK   A           V+EDKTFGLKNK  +K  QK+ ++ E++ +       K +
Sbjct: 1   MPPKK--AAPSKADLAKKQKVVEDKTFGLKNKNKSKNVQKYKKKEEEKARE------KEL 52

Query: 380 EDXXXXXXXXXXXXXXXAALFKPVQTQ-KVEKGTDPKSVXCAFFKQGQ 520
            D                 LFK   +Q KV  G DPKS+ C FFK GQ
Sbjct: 53  ND-----------------LFKVAVSQPKVPVGVDPKSIVCEFFKVGQ 83


>03_02_0790 -
           11212540-11212698,11212777-11212873,11212974-11213030,
           11213291-11213379,11213463-11213549,11213820-11213935,
           11214026-11214281,11214361-11214510,11214948-11215106,
           11215456-11215493,11215972-11216063,11216528-11216682,
           11217185-11217253
          Length = 507

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = +2

Query: 56  FYLTVVFI*ISDDY*IYCLCGVHLLTRIYNF*LIVVLNPYKKV 184
           F++    I +++DY +Y +C +H L  +  +  + +LN Y ++
Sbjct: 228 FFVAFCCIVLNNDYTLYYICPMHTLFTLMVYGALGILNKYNEI 270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,261,665
Number of Sequences: 37544
Number of extensions: 181092
Number of successful extensions: 292
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)