Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312B05f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79695-4|CAB01969.3|  374|Caenorhabditis elegans Hypothetical pr...    83   1e-16
AC024775-7|AAK68451.1|  251|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z82058-5|CAI46585.1|  309|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AL022288-5|CAA18366.1|  301|Caenorhabditis elegans Hypothetical ...    27   8.1  
AL022288-1|CAA18362.1|  301|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z79695-4|CAB01969.3|  374|Caenorhabditis elegans Hypothetical
           protein F27D4.4a protein.
          Length = 374

 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 49/105 (46%), Positives = 56/105 (53%)
 Frame = +2

Query: 203 MPPKKPSGASXXXXXXXXXXVIEDKTFGLKNKKGAKQQKFIQQVEKQVKSGGVHPVKPVE 382
           MPPK+  G S          VIEDKTFGLKNKKG K QKF+ QVE QV++     +  V 
Sbjct: 1   MPPKQ-QGPSKKSEQKRKEKVIEDKTFGLKNKKGNKNQKFVAQVENQVRNNNTR-MDLVR 58

Query: 383 DXXXXXXXXXXXXXXXAALFKPVQTQKVEKGTDPKSVXCAFFKQG 517
                           A L KPV+ QKV K  DPKS+ C FFKQG
Sbjct: 59  QQEAAKKKEKDELLDIANLLKPVE-QKVAKDVDPKSLLCVFFKQG 102


>AC024775-7|AAK68451.1|  251|Caenorhabditis elegans Hypothetical
           protein Y41D4A.1 protein.
          Length = 251

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 363 CTPPLFTCFSTC*MNFCCLAPFLFFKPNVLSSIT 262
           CTP  ++  STC  NFCC +P     PN + + T
Sbjct: 65  CTP-YYSGVSTCINNFCCTSPNSQNVPNPIITTT 97


>Z82058-5|CAI46585.1|  309|Caenorhabditis elegans Hypothetical
           protein T27C5.12 protein.
          Length = 309

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 3   VKSSTTLRRYFVRTPWKRFISR*YLSKSV 89
           +  S T+R  F+R P++RF+S  YL K V
Sbjct: 124 LNDSNTVRLAFIRDPFQRFVSF-YLDKCV 151


>AL022288-5|CAA18366.1|  301|Caenorhabditis elegans Hypothetical
           protein ZK1025.8 protein.
          Length = 301

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 21  LRRYFVRTPWKRFISR*YLSKSVMIIRYIAC 113
           +R  FVR P++RF+S  YL+K V+  R   C
Sbjct: 113 VRFVFVRDPFRRFVSM-YLNKCVVEKRCFDC 142


>AL022288-1|CAA18362.1|  301|Caenorhabditis elegans Hypothetical
           protein ZK1025.2 protein.
          Length = 301

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 21  LRRYFVRTPWKRFISR*YLSKSVMIIRYIAC 113
           +R  FVR P++RF+S  YL+K V+  R   C
Sbjct: 113 VRFVFVRDPFRRFVSM-YLNKCVVEKRCFDC 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,982,020
Number of Sequences: 27780
Number of extensions: 173250
Number of successful extensions: 441
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)