Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312B05f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   2.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   3.3  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
 Frame = +1

Query: 178 KGYKTKPNHAAQKAQ-WSQ*ENRAKKEGESY*GQNIWLEE*ERR*TAKVHSTS*KTSEER 354
           K Y T  N    +   +    +R  +E      +N   +E +RR   K+H+   K  EER
Sbjct: 208 KKYATSSNSLRSRTHDFQHTSSRYSRERSCSRDRNREYKEKDRR-YEKLHNEKEKLLEER 266

Query: 355 WSTSSQTC*GQEKGKRTKTQRA 420
            S    +C  + + K  K + +
Sbjct: 267 TSRKRYSCSREREQKSYKNENS 288


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 440 TVPPTPSAL*VFVLFPFSCPQQV*LDVLHRSSLVFQ 333
           T PPTP+ L  F     +  +Q  L++L     V++
Sbjct: 825 TTPPTPNLLRYFASIATNPKEQAQLNLLASDPAVYE 860


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,158
Number of Sequences: 438
Number of extensions: 2477
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)