Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312B04f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial...    66   1e-11
At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast...    61   4e-10
At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast...    55   3e-08
At5g19130.2 68418.m02277 GPI transamidase component family prote...    29   2.5  
At5g19130.1 68418.m02276 GPI transamidase component family prote...    29   2.5  
At5g24550.1 68418.m02899 glycosyl hydrolase family 1 protein con...    28   3.3  
At2g36670.2 68415.m04498 aspartyl protease family protein contai...    28   3.3  
At2g36670.1 68415.m04497 aspartyl protease family protein contai...    28   3.3  
At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like fami...    28   4.4  
At5g24280.1 68418.m02856 expressed protein ; expression supporte...    27   5.8  
At4g22970.1 68417.m03315 peptidase C50 family protein contains P...    27   5.8  
At3g21200.1 68416.m02679 expressed protein                             27   5.8  

>At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial
           (ATPC) identical to SP|Q96250 ATP synthase gamma chain,
           mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
           thaliana}; contains Pfam profile: PF00231 ATP synthase
          Length = 325

 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 43/134 (32%), Positives = 76/134 (56%), Gaps = 2/134 (1%)
 Frame = +3

Query: 123 RNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERAEV 302
           R+++T + +  R+KSVKNIQKIT++MKMV+A+K    +   + +R   +    F      
Sbjct: 41  RSIST-QVVRNRMKSVKNIQKITKAMKMVAASKLRAVQGRAENSRGLWQ---PFTALLGD 96

Query: 303 TPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIR--NRLSEPGAENIKVICVGDKSRGILQ 476
            P  D  K + V ++SD+GLCG +++ V KV R   +L+    + ++ + VG+K++ I+ 
Sbjct: 97  NPSIDVKKSVVVTLSSDKGLCGGINSTVVKVSRALYKLNAGPEKEVQFVIVGEKAKAIMF 156

Query: 477 RLYGKHIISVANEI 518
           R     I+    E+
Sbjct: 157 RDSKNDIVLSVTEL 170


>At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast
           (ATPC1) identical to SP|Q01908 ATP synthase gamma chain
           1, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
           thaliana}
          Length = 373

 Score = 61.3 bits (142), Expect = 4e-10
 Identities = 45/132 (34%), Positives = 64/132 (48%), Gaps = 14/132 (10%)
 Frame = +3

Query: 132 ATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERAEVTPP 311
           A+L+ +  R+ SVKN QKIT++MK+V+AAK  RA+  +   RP+ E  V+          
Sbjct: 51  ASLRELRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQ 110

Query: 312 EDD-----------PKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIK--VICVG 452
            DD            K   V +T DRGLCG  +  + K    R+ E     ++  VI VG
Sbjct: 111 TDDVDVPLTKVRPVKKVALVVVTGDRGLCGGFNNFIIKKAEARIKELKGLGLEYTVISVG 170

Query: 453 DKSRG-ILQRLY 485
            K     L+R Y
Sbjct: 171 KKGNSYFLRRPY 182


>At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast
           (ATPC2) identical to SP|Q01909 ATP synthase gamma chain
           2, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
           thaliana}; contains Pfam profile: PF00231 ATP synthase;
           similar to ATP synthase gamma-subunit GI:21241 from
           [Spinacia oleracea]
          Length = 386

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 42/129 (32%), Positives = 62/129 (48%), Gaps = 13/129 (10%)
 Frame = +3

Query: 132 ATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQ-FYERAEVTP 308
           A ++ +  R+ SVKN QKIT++M++V+AA+  RA+  +   RP+ E  V+  Y   +   
Sbjct: 61  AGIRELRERIDSVKNTQKITEAMRLVAAARVRRAQDAVIKGRPFTETLVEILYSINQSAQ 120

Query: 309 PEDDPKQL----------FVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIK--VICVG 452
            ED    L           V +T D+GLCG  +  V+K    R+ E     I   VI VG
Sbjct: 121 LEDIDFPLSIVRPVKRVALVVVTGDKGLCGGFNNAVTKKATLRVQELKQRGIDCVVISVG 180

Query: 453 DKSRGILQR 479
            K      R
Sbjct: 181 KKGNAYFSR 189


>At5g19130.2 68418.m02277 GPI transamidase component family protein
           / Gaa1-like family protein contains Pfam profile:
           PF04114 Gaa1-like, GPI transamidase component
          Length = 696

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -2

Query: 511 LATLMMCFPYNLCRIPRDLSPTQITLMFSAPGSLRRLRITLDTPVCT 371
           L  ++   PY +C++P   SPT  ++M+    S   L   +  P C+
Sbjct: 508 LGFIVTLLPYFICQVPGQHSPTNRSIMWGTTSSSLLLITFVTMPGCS 554


>At5g19130.1 68418.m02276 GPI transamidase component family protein
           / Gaa1-like family protein contains Pfam profile:
           PF04114 Gaa1-like, GPI transamidase component
          Length = 699

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -2

Query: 511 LATLMMCFPYNLCRIPRDLSPTQITLMFSAPGSLRRLRITLDTPVCT 371
           L  ++   PY +C++P   SPT  ++M+    S   L   +  P C+
Sbjct: 511 LGFIVTLLPYFICQVPGQHSPTNRSIMWGTTSSSLLLITFVTMPGCS 557


>At5g24550.1 68418.m02899 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to anther-specific protein ATA27 (GI:2746341)
           [Arabidopsis thaliana]
          Length = 534

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -1

Query: 521 SNLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFRY 384
           S ++ N+ D + +     TARF++H  H+D+   RF  T   H +Y
Sbjct: 329 SMMLQNSFDFIGINYY--TARFVAHDLHVDLSRPRF--TTDQHLQY 370


>At2g36670.2 68415.m04498 aspartyl protease family protein contains
           Pfam profile: PF00026 eukaryotic aspartyl protease
          Length = 507

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 430 FSAPGSLRRLRITLDTPVCTAPHKPLSEVIATNNCLGSS 314
           F APGSL    +T   P+C++  +  +   + NN  G S
Sbjct: 147 FDAPGSLTAGSVTCSDPICSSVFQTTAAQCSENNQCGYS 185


>At2g36670.1 68415.m04497 aspartyl protease family protein contains
           Pfam profile: PF00026 eukaryotic aspartyl protease
          Length = 512

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 430 FSAPGSLRRLRITLDTPVCTAPHKPLSEVIATNNCLGSS 314
           F APGSL    +T   P+C++  +  +   + NN  G S
Sbjct: 152 FDAPGSLTAGSVTCSDPICSSVFQTTAAQCSENNQCGYS 190


>At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like family
           protein  contains Pfam profile PF04091: Exocyst complex
           subunit Sec15-like
          Length = 771

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -1

Query: 458 FISHTDHLDVLSTRFAETVADHFRYTSVYSSAQTSVRGHSNKQLLG 321
           F  H  HL  +  R AE    HF  T   ++A+ ++ G   K++ G
Sbjct: 536 FFRHAAHLSGVPLRMAERGRRHFPLTKSQNTAEDTLSGMLKKKIDG 581


>At5g24280.1 68418.m02856 expressed protein ; expression supported by
            MPSS
          Length = 1634

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 105  PPPRLGCPHPVRSVPTFCKFYGCLSVKFTS 16
            PPP  G P      PT C  +G L+++ +S
Sbjct: 1249 PPPESGIPSITNPWPTPCSQFGVLAIRSSS 1278


>At4g22970.1 68417.m03315 peptidase C50 family protein contains Pfam
            PF03568: Peptidase family C50
          Length = 1773

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 164  FKTDGNGLQSSHIPVWLMVNHRHDLGAH 81
            F++DGN L +SH   W+   H+  LG H
Sbjct: 1190 FESDGNELSASH---WVSFFHQASLGTH 1214


>At3g21200.1 68416.m02679 expressed protein
          Length = 317

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 427 SAPGSLR-RLRITLDTPVCTAPHKPLSEVIATNNCLGSSSGGVTSALS 287
           S P SLR  +  TLDTP   + HKP    + + + +  SS G  S L+
Sbjct: 35  SRPISLRCSVSTTLDTPATASTHKPFPAEV-SRSIMELSSVGTLSTLT 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,652,663
Number of Sequences: 28952
Number of extensions: 281197
Number of successful extensions: 741
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)