Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312A10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase family...    28   0.97 
SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|...    25   6.8  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    25   6.8  

>SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 326 FRKKNWYMKTIKIDPDSDSEQITFRVC 406
           F +K+W  KT++   +SD E + + VC
Sbjct: 144 FTEKDWNPKTLREAEESDDELLNYTVC 170


>SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 161

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 469 INSKKISLVLTIEYTTCNIINAHPKSNLFRIGIWID-FD 356
           I  K++     I +T C  +N  PK  +FR+ + ++ FD
Sbjct: 4   IAGKRLVYFPNITFTLCRGLNLQPKFAVFRVPLHVNKFD 42


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
 Frame = -1

Query: 131 LRTQYQQRPPTHSNTTIHKRKPRNTKI-----ITIPFFRRLNIHKING 3
           L+T+ +  P +   + +     RNT +     +T+P F RL+  K+NG
Sbjct: 84  LQTKIRANPLSVQKSNVPSFSSRNTMLASRAPLTVPMFLRLSDLKLNG 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,756,296
Number of Sequences: 5004
Number of extensions: 28693
Number of successful extensions: 55
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)