Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312A10f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0749 + 5599238-5600128                                           30   0.98 
08_02_0716 + 20364848-20364978,20365011-20365230                       28   5.2  
07_01_0935 + 7905748-7905765,7906071-7906096,7906142-7906166,790...    27   6.9  
05_07_0314 + 29162075-29163436,29163520-29163900,29164911-29165441     27   6.9  
07_03_1677 + 28596243-28596320,28596803-28596931,28597040-285972...    27   9.1  

>06_01_0749 + 5599238-5600128
          Length = 296

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 152 VYYKIKYLRTQYQQRPPTHSNTTIHKRKPR 63
           VYYK+K  ++++   PP  + TT H R+ R
Sbjct: 145 VYYKLKRNKSKFLHAPPQATTTTPHDRRVR 174


>08_02_0716 + 20364848-20364978,20365011-20365230
          Length = 116

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 24  KPTKERDSNYFCITWFSFMYCSVAVCRRSLL 116
           +P    D +Y C  W S+ YC V   R S++
Sbjct: 72  QPVDRSDLSYICFKWSSYDYCLVLDQRCSVI 102


>07_01_0935 +
           7905748-7905765,7906071-7906096,7906142-7906166,
           7906891-7907700,7907803-7907934,7908102-7908470,
           7908540-7908671,7909135-7909662
          Length = 679

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 3   AVYFMNIKPTKERDSNYFCITWFSFMYCSV 92
           A+   + +P    D +Y C  W S+ YC V
Sbjct: 392 AISHTSPQPVDRSDLSYICFKWSSYGYCLV 421



 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 24  KPTKERDSNYFCITWFSFMYCSV 92
           +P    D +Y C  W S+ YC V
Sbjct: 184 QPVDRSDLSYICFKWSSYGYCLV 206



 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 24  KPTKERDSNYFCITWFSFMYCSV 92
           +P    D +Y C  W S+ YC V
Sbjct: 564 QPVDRSDLSYICFKWSSYGYCLV 586


>05_07_0314 + 29162075-29163436,29163520-29163900,29164911-29165441
          Length = 757

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 116 QQRPPTHSNTTIHKRKPRNTKIITIPFFRR 27
           Q+ PP H   +IH   PR T+   + + RR
Sbjct: 679 QKYPPIHGTASIHSAVPRGTEAQLLDWARR 708


>07_03_1677 +
           28596243-28596320,28596803-28596931,28597040-28597210,
           28597491-28597583
          Length = 156

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 207 VKKYII*LNKSDTYFKANSLLQNQIPTHTIPT 112
           +K+ ++ LNK     +A +L QN IPT T+ T
Sbjct: 43  LKQKVVRLNKEIACAEAAALRQNSIPTVTVET 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,787,314
Number of Sequences: 37544
Number of extensions: 140802
Number of successful extensions: 261
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)