Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312A10f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr...    31   0.50 
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical...    31   0.50 
Z82086-5|CAB04992.2|  325|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z82086-3|CAB04997.1|  325|Caenorhabditis elegans Hypothetical pr...    28   3.5  

>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical protein
            F15D4.7 protein.
          Length = 2268

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -1

Query: 152  VYYKIKYLRTQYQQRPPT-HSNTTIHKRKPRNTKIITIPFFRRLNIH 15
            +Y    YL+ QY+ +PP     T+ +K KP N   +TIP    L I+
Sbjct: 1447 IYATTIYLQYQYKDKPPVIQLLTSKNKIKPANCNTLTIPKMELLAIN 1493


>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
            protein F15D4.7 protein.
          Length = 2268

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -1

Query: 152  VYYKIKYLRTQYQQRPPT-HSNTTIHKRKPRNTKIITIPFFRRLNIH 15
            +Y    YL+ QY+ +PP     T+ +K KP N   +TIP    L I+
Sbjct: 1447 IYATTIYLQYQYKDKPPVIQLLTSKNKIKPANCNTLTIPKMELLAIN 1493


>Z82086-5|CAB04992.2|  325|Caenorhabditis elegans Hypothetical
           protein ZK228.5 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +3

Query: 405 ALIMLHVVYSIVKTRDIFFEFITTNA*TLPFC 500
           +L++LH+V + V   D++  F+TT   TLP C
Sbjct: 50  SLLLLHLVGAFV---DVYLSFVTTPVLTLPGC 78


>Z82086-3|CAB04997.1|  325|Caenorhabditis elegans Hypothetical
           protein ZK228.6 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +3

Query: 405 ALIMLHVVYSIVKTRDIFFEFITTNA*TLPFCV 503
           +L++LH+V + V   D++  F+TT   TLP C+
Sbjct: 50  SLLLLHLVGAYV---DVYLSFVTTPVLTLPGCL 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,502,795
Number of Sequences: 27780
Number of extensions: 157316
Number of successful extensions: 402
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)