Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312A10f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    23   1.4  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    23   1.4  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    23   1.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   5.8  

>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 51  YFCITWFSFMYCSVAVCRRSLLVLCA*VFD 140
           + C  W +   C V  C  S+L LCA   D
Sbjct: 107 HLCKLWLT---CDVLCCTASILNLCAIALD 133


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 51  YFCITWFSFMYCSVAVCRRSLLVLCA*VFD 140
           + C  W +   C V  C  S+L LCA   D
Sbjct: 107 HLCKLWLT---CDVLCCTASILNLCAIALD 133


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 51  YFCITWFSFMYCSVAVCRRSLLVLCA*VFD 140
           + C  W +   C V  C  S+L LCA   D
Sbjct: 107 HLCKLWLT---CDVLCCTASILNLCAIALD 133


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/38 (23%), Positives = 18/38 (47%)
 Frame = -2

Query: 469 INSKKISLVLTIEYTTCNIINAHPKSNLFRIGIWIDFD 356
           + ++   LVL+   T   II+   K+ L    +W+  +
Sbjct: 42  VGNESEPLVLSFGLTLMQIIDVDEKNQLLITNLWLKLE 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,893
Number of Sequences: 438
Number of extensions: 2125
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)