Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312A09f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0160 - 26382377-26382874                                         28   5.2  
01_05_0668 - 24147412-24147618,24148019-24148286,24149506-241497...    27   6.9  
09_02_0250 + 6266818-6267029,6267230-6267287,6267999-6268118,627...    27   9.1  
01_01_0886 - 6970112-6970225,6970357-6970473,6970567-6970635,697...    27   9.1  

>02_05_0160 - 26382377-26382874
          Length = 165

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 175 ERMMCERHGCSASSLSRTTPPLG 107
           ER  C RHG  +SS   T PP G
Sbjct: 33  ERCRCHRHGAWSSSTMITPPPRG 55


>01_05_0668 -
           24147412-24147618,24148019-24148286,24149506-24149728,
           24149822-24149996
          Length = 290

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 401 YGSLLHIFVAHKLPALISIELFRFII 324
           YG  L IF+   L +++ IE+FR++I
Sbjct: 211 YGYSLFIFIPASLLSIVPIEIFRWVI 236


>09_02_0250 + 6266818-6267029,6267230-6267287,6267999-6268118,
            6272359-6272511,6273381-6273586,6274280-6274733,
            6276573-6276610,6276923-6277046,6277184-6277246,
            6277350-6277412,6277526-6278152,6278267-6278294,
            6278373-6278413,6278689-6278851,6278987-6279039,
            6279217-6279262,6279373-6279444,6279578-6279741,
            6279968-6280099,6280249-6280565,6280721-6280892,
            6281009-6281107,6281275-6281349,6281446-6281504,
            6281647-6281836,6281982-6282020
          Length = 1255

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 467  YSRHVLLSNDIKCDDINNLLLTYGSLLHIFVAHK 366
            +S  V+L N+   DDINN+ + Y +   IF  HK
Sbjct: 1194 WSPRVVLPNEFSKDDINNIRVQYTN--KIFFHHK 1225


>01_01_0886 -
           6970112-6970225,6970357-6970473,6970567-6970635,
           6970711-6970849,6970964-6971532,6971799-6971966,
           6972097-6972184,6972260-6972818,6972924-6973024,
           6973113-6973155,6973845-6973938,6974160-6974215,
           6974460-6974581,6975306-6975517
          Length = 816

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -1

Query: 455 VLLSNDIKCDDINNLLLTYGSLLHIFVAHKLPALISIEL 339
           VL  ND++CDD+ ++ L+   +L  ++   + + +S  L
Sbjct: 339 VLAENDLECDDLGSICLSDTMVLGRYIEEIVVSAVSYHL 377


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,990,113
Number of Sequences: 37544
Number of extensions: 145955
Number of successful extensions: 202
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)