Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312A09f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34954| Best HMM Match : HSBP1 (HMM E-Value=5.6)                     27   7.1  
SB_7788| Best HMM Match : PAN (HMM E-Value=0.0013)                     27   9.4  

>SB_34954| Best HMM Match : HSBP1 (HMM E-Value=5.6)
          Length = 106

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 400 MAVYCIYSSPTSFRL*SQSSYLDLLFVSVRNS 305
           ++VYC  SS   F L S ++Y+D +   +RN+
Sbjct: 41  ISVYCGQSSGQQFSLESLNAYIDAMVRKIRNA 72


>SB_7788| Best HMM Match : PAN (HMM E-Value=0.0013)
          Length = 294

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/41 (24%), Positives = 24/41 (58%)
 Frame = +2

Query: 203 FTIIRNVSNN*IIKSYIYKSDYVKCFLLFQIQLKTISY*YE 325
           FT++       +++SY  + ++++C +L Q   K +SY ++
Sbjct: 26  FTLMDRYLPGHVLESYSSRQEWIQCTMLCQDMTKCVSYNFD 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,274,603
Number of Sequences: 59808
Number of extensions: 186954
Number of successful extensions: 257
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)