Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312A09f
         (521 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37018-1|AAC46920.1| 1389|Drosophila melanogaster TIM protein.         30   1.7  
BT010042-1|AAQ22511.1| 2045|Drosophila melanogaster LD36052p pro...    30   1.7  
AY060946-1|AAL28494.1|  477|Drosophila melanogaster GM08528p pro...    30   1.7  
AY058278-1|AAL13507.1|  790|Drosophila melanogaster GH03106p pro...    30   1.7  
AF157066-1|AAD43129.1| 2262|Drosophila melanogaster klarsicht pr...    30   1.7  
AF032401-1|AAB94890.1| 1398|Drosophila melanogaster circadian cl...    30   1.7  
AE014296-105|AAF47389.1| 2262|Drosophila melanogaster CG17046-PA...    30   1.7  
AE014296-104|ABI31227.1| 2045|Drosophila melanogaster CG17046-PB...    30   1.7  
AE014134-621|AAN10372.2|  914|Drosophila melanogaster CG3234-PC,...    30   1.7  
AE014134-620|ABC65862.1| 1122|Drosophila melanogaster CG3234-PF,...    30   1.7  
AE014134-619|AAX52649.1| 1122|Drosophila melanogaster CG3234-PE,...    30   1.7  
AE014134-618|AAF51098.4| 1398|Drosophila melanogaster CG3234-PB,...    30   1.7  
AE014134-617|AAN10371.2| 1421|Drosophila melanogaster CG3234-PD,...    30   1.7  
AE014134-616|AAF51097.1| 1389|Drosophila melanogaster CG3234-PA,...    30   1.7  
BT001526-1|AAN71281.1|  720|Drosophila melanogaster RE04406p pro...    28   6.7  
AY058648-1|AAL13877.1|  846|Drosophila melanogaster LD35132p pro...    28   6.7  
AF124743-1|AAD32857.1|  720|Drosophila melanogaster DNA replicat...    28   6.7  
AE014297-2580|AAF55594.2|  846|Drosophila melanogaster CG7719-PA...    28   6.7  
AE014296-1533|AAF50357.1|  720|Drosophila melanogaster CG4978-PA...    28   6.7  
AB010109-1|BAA34733.1|  717|Drosophila melanogaster MCM7 protein.      28   6.7  
AY070819-1|AAL48441.1|   73|Drosophila melanogaster AT25392p pro...    28   8.8  

>U37018-1|AAC46920.1| 1389|Drosophila melanogaster TIM protein.
          Length = 1389

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = -1

Query: 470 KYSRHVLLSNDI----KCDDINNLLLTYGSLLHIFVAH 369
           +Y +H+L S+      KCD INN LL   ++LHI   H
Sbjct: 160 EYMKHILESDPKLSPHKCDQINNCLLLLRNILHIPETH 197


>BT010042-1|AAQ22511.1| 2045|Drosophila melanogaster LD36052p
           protein.
          Length = 2045

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/72 (26%), Positives = 33/72 (45%)
 Frame = -2

Query: 319 SVRNSLKLNLK*EKTFDIIGFIYVGFNYLIITNISNYCKTFLNE*KDSERMMCERHGCSA 140
           S+ +S  L L      D+   I   +NY++ TN+ + CK    E + +  ++ +   CS 
Sbjct: 203 SLHSSATLGLGSSGKDDLWAAIQTNYNYIMDTNLLDTCKEARCEIEGAATVLEKSSECSF 262

Query: 139 SSLSRTTPPLGV 104
             L  T  P G+
Sbjct: 263 KMLDETQRPEGL 274


>AY060946-1|AAL28494.1|  477|Drosophila melanogaster GM08528p
           protein.
          Length = 477

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/72 (26%), Positives = 33/72 (45%)
 Frame = -2

Query: 319 SVRNSLKLNLK*EKTFDIIGFIYVGFNYLIITNISNYCKTFLNE*KDSERMMCERHGCSA 140
           S+ +S  L L      D+   I   +NY++ TN+ + CK    E + +  ++ +   CS 
Sbjct: 203 SLHSSATLGLGSSGKDDLWAAIQTNYNYIMDTNLLDTCKEARCEIEGAATVLEKSSECSF 262

Query: 139 SSLSRTTPPLGV 104
             L  T  P G+
Sbjct: 263 KMLDETQRPEGL 274


>AY058278-1|AAL13507.1|  790|Drosophila melanogaster GH03106p
           protein.
          Length = 790

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = -1

Query: 470 KYSRHVLLSNDI----KCDDINNLLLTYGSLLHIFVAH 369
           +Y +H+L S+      KCD INN LL   ++LHI   H
Sbjct: 36  EYMKHILESDPKLSPHKCDQINNCLLLLRNILHIPETH 73


>AF157066-1|AAD43129.1| 2262|Drosophila melanogaster klarsicht
           protein protein.
          Length = 2262

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/72 (26%), Positives = 33/72 (45%)
 Frame = -2

Query: 319 SVRNSLKLNLK*EKTFDIIGFIYVGFNYLIITNISNYCKTFLNE*KDSERMMCERHGCSA 140
           S+ +S  L L      D+   I   +NY++ TN+ + CK    E + +  ++ +   CS 
Sbjct: 203 SLHSSATLGLGSSGKDDLWAAIQTNYNYIMDTNLLDTCKEARCEIEGAATVLEKSSECSF 262

Query: 139 SSLSRTTPPLGV 104
             L  T  P G+
Sbjct: 263 KMLDETQRPEGL 274


>AF032401-1|AAB94890.1| 1398|Drosophila melanogaster circadian clock
           protein protein.
          Length = 1398

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = -1

Query: 470 KYSRHVLLSNDI----KCDDINNLLLTYGSLLHIFVAH 369
           +Y +H+L S+      KCD INN LL   ++LHI   H
Sbjct: 137 EYMKHILESDPKLSPHKCDQINNCLLLLRNILHIPETH 174


>AE014296-105|AAF47389.1| 2262|Drosophila melanogaster CG17046-PA,
           isoform A protein.
          Length = 2262

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/72 (26%), Positives = 33/72 (45%)
 Frame = -2

Query: 319 SVRNSLKLNLK*EKTFDIIGFIYVGFNYLIITNISNYCKTFLNE*KDSERMMCERHGCSA 140
           S+ +S  L L      D+   I   +NY++ TN+ + CK    E + +  ++ +   CS 
Sbjct: 203 SLHSSATLGLGSSGKDDLWAAIQTNYNYIMDTNLLDTCKEARCEIEGAATVLEKSSECSF 262

Query: 139 SSLSRTTPPLGV 104
             L  T  P G+
Sbjct: 263 KMLDETQRPEGL 274


>AE014296-104|ABI31227.1| 2045|Drosophila melanogaster CG17046-PB,
           isoform B protein.
          Length = 2045

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/72 (26%), Positives = 33/72 (45%)
 Frame = -2

Query: 319 SVRNSLKLNLK*EKTFDIIGFIYVGFNYLIITNISNYCKTFLNE*KDSERMMCERHGCSA 140
           S+ +S  L L      D+   I   +NY++ TN+ + CK    E + +  ++ +   CS 
Sbjct: 203 SLHSSATLGLGSSGKDDLWAAIQTNYNYIMDTNLLDTCKEARCEIEGAATVLEKSSECSF 262

Query: 139 SSLSRTTPPLGV 104
             L  T  P G+
Sbjct: 263 KMLDETQRPEGL 274


>AE014134-621|AAN10372.2|  914|Drosophila melanogaster CG3234-PC,
           isoform C protein.
          Length = 914

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = -1

Query: 470 KYSRHVLLSNDI----KCDDINNLLLTYGSLLHIFVAH 369
           +Y +H+L S+      KCD INN LL   ++LHI   H
Sbjct: 160 EYMKHILESDPKLSPHKCDQINNCLLLLRNILHIPETH 197


>AE014134-620|ABC65862.1| 1122|Drosophila melanogaster CG3234-PF,
           isoform F protein.
          Length = 1122

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = -1

Query: 470 KYSRHVLLSNDI----KCDDINNLLLTYGSLLHIFVAH 369
           +Y +H+L S+      KCD INN LL   ++LHI   H
Sbjct: 160 EYMKHILESDPKLSPHKCDQINNCLLLLRNILHIPETH 197


>AE014134-619|AAX52649.1| 1122|Drosophila melanogaster CG3234-PE,
           isoform E protein.
          Length = 1122

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = -1

Query: 470 KYSRHVLLSNDI----KCDDINNLLLTYGSLLHIFVAH 369
           +Y +H+L S+      KCD INN LL   ++LHI   H
Sbjct: 160 EYMKHILESDPKLSPHKCDQINNCLLLLRNILHIPETH 197


>AE014134-618|AAF51098.4| 1398|Drosophila melanogaster CG3234-PB,
           isoform B protein.
          Length = 1398

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = -1

Query: 470 KYSRHVLLSNDI----KCDDINNLLLTYGSLLHIFVAH 369
           +Y +H+L S+      KCD INN LL   ++LHI   H
Sbjct: 137 EYMKHILESDPKLSPHKCDQINNCLLLLRNILHIPETH 174


>AE014134-617|AAN10371.2| 1421|Drosophila melanogaster CG3234-PD,
           isoform D protein.
          Length = 1421

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = -1

Query: 470 KYSRHVLLSNDI----KCDDINNLLLTYGSLLHIFVAH 369
           +Y +H+L S+      KCD INN LL   ++LHI   H
Sbjct: 160 EYMKHILESDPKLSPHKCDQINNCLLLLRNILHIPETH 197


>AE014134-616|AAF51097.1| 1389|Drosophila melanogaster CG3234-PA,
           isoform A protein.
          Length = 1389

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = -1

Query: 470 KYSRHVLLSNDI----KCDDINNLLLTYGSLLHIFVAH 369
           +Y +H+L S+      KCD INN LL   ++LHI   H
Sbjct: 160 EYMKHILESDPKLSPHKCDQINNCLLLLRNILHIPETH 197


>BT001526-1|AAN71281.1|  720|Drosophila melanogaster RE04406p
           protein.
          Length = 720

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -1

Query: 449 LSNDIKCDDINNLLLTYGSLLHIFVAHKLPALISIEL 339
           LS   KCDD       YGS L + +AH+   LI+I+L
Sbjct: 17  LSEFCKCDDDGKKEFVYGSQL-VKLAHREQVLITIDL 52


>AY058648-1|AAL13877.1|  846|Drosophila melanogaster LD35132p
           protein.
          Length = 846

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = -2

Query: 223 NISNYCKTFLNE*KDSERMMCERHGCSASSLSRTTPPL 110
           +I++ C T +N  +DS    C  H C+++ LS+ +PPL
Sbjct: 318 SITHTCTTNVNP-QDSSSS-CSFHTCNSADLSKCSPPL 353


>AF124743-1|AAD32857.1|  720|Drosophila melanogaster DNA replication
           factor MCM7 protein.
          Length = 720

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -1

Query: 449 LSNDIKCDDINNLLLTYGSLLHIFVAHKLPALISIEL 339
           LS   KCDD       YGS L + +AH+   LI+I+L
Sbjct: 17  LSEFCKCDDDGKKEFVYGSQL-VKLAHREQVLITIDL 52


>AE014297-2580|AAF55594.2|  846|Drosophila melanogaster CG7719-PA
           protein.
          Length = 846

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = -2

Query: 223 NISNYCKTFLNE*KDSERMMCERHGCSASSLSRTTPPL 110
           +I++ C T +N  +DS    C  H C+++ LS+ +PPL
Sbjct: 318 SITHTCTTNVNP-QDSSSS-CSFHTCNSADLSKCSPPL 353


>AE014296-1533|AAF50357.1|  720|Drosophila melanogaster CG4978-PA
           protein.
          Length = 720

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -1

Query: 449 LSNDIKCDDINNLLLTYGSLLHIFVAHKLPALISIEL 339
           LS   KCDD       YGS L + +AH+   LI+I+L
Sbjct: 17  LSEFCKCDDDGKKEFVYGSQL-VKLAHREQVLITIDL 52


>AB010109-1|BAA34733.1|  717|Drosophila melanogaster MCM7 protein.
          Length = 717

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -1

Query: 449 LSNDIKCDDINNLLLTYGSLLHIFVAHKLPALISIEL 339
           LS   KCDD       YGS L + +AH+   LI+I+L
Sbjct: 17  LSEFCKCDDDGKKEFVYGSQL-VKLAHREQVLITIDL 52


>AY070819-1|AAL48441.1|   73|Drosophila melanogaster AT25392p
           protein.
          Length = 73

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +3

Query: 123 VRESELALHPCLSHI 167
           VRES+LAL PC+ H+
Sbjct: 56  VRESQLALRPCIYHV 70


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,663,748
Number of Sequences: 53049
Number of extensions: 271267
Number of successful extensions: 399
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)