Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312A08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   3.9  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    26   3.9  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.2  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    25   6.8  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.0  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   9.0  
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom...    25   9.0  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = -1

Query: 224 LFIYFVIYRL---FHLLFYSLYSQIFIVLLHTISI*VYLHAIFYY 99
           LF +F+++ L   F   F    SQIFIV   +  I   LH +F++
Sbjct: 118 LFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPI---LHFLFFF 159



 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -1

Query: 266 FSLVFFV*ITLSVYLFIYFVIYRLFH-LLFYSLYSQIFIVLLHTISI*VYLHAIF 105
           FS +FF    LS    +YF  + + H L F+ L   +F+  L ++S  + L  +F
Sbjct: 133 FSFLFF----LSQIFIVYFSSFPILHFLFFFFLCVCVFLSFLFSLSHLLSLAILF 183


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 354 NTDTVQEFQEKY*YSIKRTYKNRTNFFWEQQQHRASE 464
           +T TV++ +     SIK    N  NF  E+ ++ ASE
Sbjct: 8   STSTVKDNEHSLDLSIKSIPSNEKNFSTEKSENEASE 44


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +1

Query: 367 YKSFRRNTNIV*REHTKTERTFFGNNNNIALANP 468
           YK++RR T+    ++ K+ R    N+++I L+NP
Sbjct: 41  YKTYRRITDCPEIKNKKSRRKNQRNSSSIGLSNP 74


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 438 PKKSSFCFCMFSLYYISISPETLVRY 361
           PK+ ++ F    + Y+S +P+T V Y
Sbjct: 248 PKEGTYTFSNMHIRYVSANPKTPVMY 273


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +1

Query: 415 KTERTFFGNNNNIALANPY-XGC 480
           +T R FF NN  + L +PY  GC
Sbjct: 586 RTYRVFFLNNGTLPLNHPYVRGC 608


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 467  GFASAMLLLFPKKVRSVFVCSLYTILVFLLKLLYGIRI 354
            G ++  ++LF   + S  +C+L T+L F  K  Y +R+
Sbjct: 1053 GSSTVSIILFSLFLVSPLICALATMLAF-QKFFYQVRL 1089


>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -1

Query: 215 YF-VIYRLFHLLFYSLYSQIFIVLLHTISI 129
           YF ++ RLF L+ + LYS  F ++LH + I
Sbjct: 13  YFPLVLRLFFLVVFGLYS--FTLILHLLVI 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,533,215
Number of Sequences: 5004
Number of extensions: 23650
Number of successful extensions: 52
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)