Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312A08f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13149| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.11
SB_108| Best HMM Match : DUF845 (HMM E-Value=4.1) 31 0.58
SB_28024| Best HMM Match : RVT_1 (HMM E-Value=0) 31 0.76
SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_2127| Best HMM Match : 7tm_1 (HMM E-Value=8.4e-16) 29 2.3
SB_23645| Best HMM Match : Bro-N (HMM E-Value=7.2) 29 3.1
SB_11767| Best HMM Match : Kinesin (HMM E-Value=0) 29 3.1
SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_14358| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_56986| Best HMM Match : Peptidase_M50 (HMM E-Value=3.8) 27 9.4
SB_21205| Best HMM Match : Ribosomal_L30_N (HMM E-Value=0.75) 27 9.4
SB_58944| Best HMM Match : fn3 (HMM E-Value=0.88) 27 9.4
SB_50618| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00017) 27 9.4
SB_47673| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_45324| Best HMM Match : MbeB_N (HMM E-Value=1.7) 27 9.4
SB_35523| Best HMM Match : RVT_1 (HMM E-Value=0) 27 9.4
SB_20293| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_13149| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 257
Score = 33.5 bits (73), Expect = 0.11
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 9/95 (9%)
Frame = -1
Query: 269 LFSLVFFV*ITLSVYLFIYFVIYRLFHLLFYSLYSQIFIVLLHTISI*VYLHAIF----- 105
L ++++ IT +++ Y I L H+++Y+ + V+ +T I LH ++
Sbjct: 93 LLHVMYYTRITYLLHVMYYTRIPYLLHVMYYTRIPYLLHVMYYT-RIPYLLHVMYYTRIP 151
Query: 104 YYVHILYSSRI**VLCVSIY----YIMCFYVYDRI 12
Y +H++Y +RI +L V Y Y++ Y RI
Sbjct: 152 YLLHVMYYTRIPYLLHVMYYTRIPYLLHVMYYTRI 186
Score = 31.9 bits (69), Expect = 0.33
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Frame = -1
Query: 269 LFSLVFFV*ITLSVYLFIYFVIYRLFHLLFYSLYSQIFIVLLHTISI*VYLHAIF----- 105
L +++ IT +++ Y I L H+++Y+ + V+ +T I LH ++
Sbjct: 81 LLHVMYCTRITYLLHVMYYTRITYLLHVMYYTRIPYLLHVMYYT-RIPYLLHVMYYTRIP 139
Query: 104 YYVHILYSSRI**VLCVSIY----YIMCFYVYDRI 12
Y +H++Y +RI +L V Y Y++ Y RI
Sbjct: 140 YLLHVMYYTRIPYLLHVMYYTRIPYLLHVMYYTRI 174
Score = 31.5 bits (68), Expect = 0.44
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Frame = -1
Query: 221 FIYFVIYRLFHLLFYSLYSQIFIVLLHTISI*VYLHAIFYYVHILYSSRI**VL----CV 54
F++ + Y L + +Y LLH + Y I Y++H++Y +RI +L C
Sbjct: 33 FLHVMYYTRIPYLLHVMYCTRITYLLHVM----YYARIPYFLHVMYYARIPYLLHVMYCT 88
Query: 53 SIYYIMCFYVYDRI 12
I Y++ Y RI
Sbjct: 89 RITYLLHVMYYTRI 102
Score = 29.1 bits (62), Expect = 2.3
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Frame = -1
Query: 269 LFSLVFFV*ITLSVYLFIYFVIYRLFHLLFYSLYSQIFIVLLHTISI*VYLHAIF----- 105
L ++++ I +++ Y I L H+++Y+ + V+ +T I LH ++
Sbjct: 165 LLHVMYYTRIPYLLHVMYYTRIPYLLHVMYYARIPYLLHVMYYT-RIPYLLHVMYYTRIP 223
Query: 104 YYVHILYSSRI**VLCVSIY 45
Y +H++Y +RI +L V Y
Sbjct: 224 YLLHVMYYARIPYLLHVMHY 243
Score = 27.5 bits (58), Expect = 7.1
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Frame = -1
Query: 203 YRLFHLLFYSLYSQIFIVLLHTISI*VYLHAIFYYVHILYSSRI**VL----CVSIYYIM 36
Y L + +Y LLH + Y I Y++H++Y +RI +L C I Y++
Sbjct: 3 YTRIPYLLHVMYCTRITYLLHVM----YCTRIPYFLHVMYYTRIPYLLHVMYCTRITYLL 58
Query: 35 CFYVYDRI 12
Y RI
Sbjct: 59 HVMYYARI 66
>SB_108| Best HMM Match : DUF845 (HMM E-Value=4.1)
Length = 123
Score = 31.1 bits (67), Expect = 0.58
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = -1
Query: 269 LFSLVFFV*ITLSVYLFIYFVIYRLFHLLFYSL 171
L ++V ++ I L +YL IY +IY + +L+ Y++
Sbjct: 82 LLNVVAYLMIYLMIYLMIYLMIYLMIYLMIYAV 114
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 269 LFSLVFFV*ITLSVYLFIYFVIYRLFHLLFY 177
LF L+ V L +YL IY +IY + +L+ Y
Sbjct: 78 LFLLLLNVVAYLMIYLMIYLMIYLMIYLMIY 108
>SB_28024| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 968
Score = 30.7 bits (66), Expect = 0.76
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 366 VQEFQEKY*YSIKRTYKNRTNFFWEQQQHRASEP 467
++E +E + S++R YKN T FW +AS P
Sbjct: 450 LRESRENFFQSLERDYKNNTKRFWGLDASKASGP 483
>SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 30.3 bits (65), Expect = 1.0
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = -1
Query: 242 ITLSVYLFIYFVIYRLFHLLFYS-LYSQIFIVLLHTISI*VYLHAIFY-YVHILYSSRI* 69
+T +Y++IY IY ++ Y+ Y+ + Y + Y YV++ +
Sbjct: 7 VTFYIYIYIYIYIYIYIYIYIYTYTYTYTYTYTYTYTYTYTYTYTYTYVYVYVYVYVYVY 66
Query: 68 *VLCVSIYYIMCFYVYDRI 12
+ V +Y + Y+YD I
Sbjct: 67 VYVYVYVYVYIYIYLYDSI 85
>SB_2127| Best HMM Match : 7tm_1 (HMM E-Value=8.4e-16)
Length = 300
Score = 29.1 bits (62), Expect = 2.3
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Frame = -1
Query: 236 LSVYLFIYFVIYRLFHLLF---YSLYSQIFIVLLHTISI*V--YLHAIFYYVHILYSSRI 72
+S++ I R F ++F Y + S L +S V +HA+++YV ++S R
Sbjct: 52 VSIFSLILITFDRFFAVVFPLKYHIMSSTNCKCLIALSWIVGSEMHAVYFYVFDIFSPRA 111
Query: 71 **VLCVSIY 45
LCVSI+
Sbjct: 112 GLELCVSIW 120
>SB_23645| Best HMM Match : Bro-N (HMM E-Value=7.2)
Length = 234
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -1
Query: 203 YRLFHLLFYSLYSQIFIVLLHTISI*VYLHAIFYYVHILYSSRI**VLCVSIYYIMCFY 27
+RL LF L Q + I + +HA ++Y H S RI + V + Y +C Y
Sbjct: 162 FRLVGALFLHLLMQTLAKCDYVFDI-ICVHASYWYFHAARSDRIHNNVTVHLLYQICTY 219
>SB_11767| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 1230
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -1
Query: 218 IYFVIYR-LFHLLFYSLYSQIFIVLLHTISI*VYLHAIFYYVHILY 84
+Y IYR L+H ++ +LYS I+ L H I +Y + H +Y
Sbjct: 15 LYHNIYRALYHNIYRALYSNIYRALYHNIYRALYSNIYRALHHNIY 60
>SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1352
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -1
Query: 269 LFSLVFFV*ITLSVYLFIYFVIYRLFHLLFYSLYSQIFIVLLHTIS 132
+F L F + + Y F++ R+F L +S QIF+ +L I+
Sbjct: 624 MFVLAFITGMVIGKYFVHKFLLCRVFRLKMFSEEGQIFMFVLAVIT 669
>SB_14358| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/79 (22%), Positives = 40/79 (50%)
Frame = -1
Query: 272 NLFSLVFFV*ITLSVYLFIYFVIYRLFHLLFYSLYSQIFIVLLHTISI*VYLHAIFYYVH 93
NL +L+ V + L + I ++ HL+ +L + + V +H I + + +VH
Sbjct: 80 NLIALLVCVHVRLIIPNMITLLMCVHVHLIIPNLIAPLVCVHIHLIIPNMITPLVCVHVH 139
Query: 92 ILYSSRI**VLCVSIYYIM 36
++ + I ++CV ++ I+
Sbjct: 140 LIIPNLIALLVCVHVHLII 158
>SB_56986| Best HMM Match : Peptidase_M50 (HMM E-Value=3.8)
Length = 216
Score = 27.1 bits (57), Expect = 9.4
Identities = 8/19 (42%), Positives = 16/19 (84%)
Frame = -1
Query: 230 VYLFIYFVIYRLFHLLFYS 174
+Y F+YF+IY +F +L+++
Sbjct: 188 IYPFVYFIIYLIFLVLYWA 206
>SB_21205| Best HMM Match : Ribosomal_L30_N (HMM E-Value=0.75)
Length = 505
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 366 VQEFQEKY*YSIKRTYKNRTNFFW 437
++E +E + S++R YKN T FW
Sbjct: 306 LRESRENFFQSLERDYKNNTKRFW 329
>SB_58944| Best HMM Match : fn3 (HMM E-Value=0.88)
Length = 697
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 366 VQEFQEKY*YSIKRTYKNRTNFFW 437
++E +E + S++R YKN T FW
Sbjct: 158 LRESRENFFQSLERDYKNNTKRFW 181
>SB_50618| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00017)
Length = 748
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 366 VQEFQEKY*YSIKRTYKNRTNFFW 437
++E +E + S++R YKN T FW
Sbjct: 514 LRESRENFFQSLERDYKNNTKRFW 537
>SB_47673| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1480
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 366 VQEFQEKY*YSIKRTYKNRTNFFW 437
++E +E + S++R YKN T FW
Sbjct: 1275 LRESRENFFQSLERDYKNNTKRFW 1298
>SB_45324| Best HMM Match : MbeB_N (HMM E-Value=1.7)
Length = 235
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 366 VQEFQEKY*YSIKRTYKNRTNFFW 437
++E +E + S++R YKN T FW
Sbjct: 197 LRESRENFFQSLERDYKNNTKRFW 220
>SB_35523| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1410
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 366 VQEFQEKY*YSIKRTYKNRTNFFW 437
++E +E + S++R YKN T FW
Sbjct: 313 LRESRENFFQSLERDYKNNTKRFW 336
>SB_20293| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1821
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 366 VQEFQEKY*YSIKRTYKNRTNFFW 437
++E +E + S++R YKN T FW
Sbjct: 261 LRESRENFFQSLERDYKNNTKRFW 284
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,622,207
Number of Sequences: 59808
Number of extensions: 151001
Number of successful extensions: 585
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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