Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312A08f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047663-4|AAY86320.1|  107|Caenorhabditis elegans Hypothetical ...    31   0.50 
Z82276-4|CAB05241.3|  327|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AF016446-6|AAC24162.1|  322|Caenorhabditis elegans Serpentine re...    29   1.5  
Z81474-5|CAB03906.1|  361|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AF038608-2|AAU05595.1|  297|Caenorhabditis elegans Serpentine re...    27   8.1  

>AF047663-4|AAY86320.1|  107|Caenorhabditis elegans Hypothetical
           protein W09G12.10 protein.
          Length = 107

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = -1

Query: 257 VFFV*ITLSVYLFIYFVIYRLFHLLFYSLYS--QIFIVLLHTISI*VYLHAI 108
           V  V ITLS++ F+Y V  +   LLFY +     +FIV +++  I   L+ +
Sbjct: 28  VLSVTITLSIFSFLYLVYAQKHALLFYIMTGLVGVFIVFIYSAGILAVLYMV 79


>Z82276-4|CAB05241.3|  327|Caenorhabditis elegans Hypothetical
           protein K03D3.4 protein.
          Length = 327

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
 Frame = -1

Query: 230 VYLFIYFVIYRLFHLLFYSLYSQIFIVLLH------TISI*VYLHAIFYYVHILYSSR 75
           VY+FI  +I  +FHLL   L  + F +          ISI  Y+H    +V++   SR
Sbjct: 106 VYVFIEMIIADVFHLLISLLAMEKFFIYFFPRWEKTVISIQKYIHKYIVFVYLACCSR 163


>AF016446-6|AAC24162.1|  322|Caenorhabditis elegans Serpentine
           receptor, class h protein20 protein.
          Length = 322

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -1

Query: 269 LFSLVFFV*ITLSVYLFIYFVIYRLFHLLFYSLYSQIFI 153
           LFSL+F      ++Y F  F+I+ +   LF+ LYS + +
Sbjct: 30  LFSLIFIKTKIFAIYRF--FLIWHVLDNLFFELYSSVMV 66


>Z81474-5|CAB03906.1|  361|Caenorhabditis elegans Hypothetical
           protein C18D4.9 protein.
          Length = 361

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = -1

Query: 278 PANLFSLVFFV*ITLSVYLFIYFVIYRLFHLLFYSLYSQIFIVLLHTISI*VYLHAIFYY 99
           P   + ++    I   + L  +FV  ++FH+L + L  Q F+     +     L++I  Y
Sbjct: 92  PVVNYRVILIFSIASIIQLLRFFVTLQVFHVLIFMLAIQNFLRFFFPLKCSSSLNSIHKY 151

Query: 98  VHILY 84
           V  +Y
Sbjct: 152 VKPIY 156


>AF038608-2|AAU05595.1|  297|Caenorhabditis elegans Serpentine
           receptor, class z protein70 protein.
          Length = 297

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -1

Query: 239 TLSVYLFIYFVIYRLFHLLFYSLYSQIFIVLLHTISI*VYLHAI 108
           TL  Y+F   +   +F L++  L++ IFI+ L   SI + ++ I
Sbjct: 213 TLYTYIFWLTITVVVFKLIYILLFTIIFILFLPQFSIQLLVYII 256


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,213,280
Number of Sequences: 27780
Number of extensions: 127128
Number of successful extensions: 438
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)