Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312A08f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35160.1 68418.m04167 endomembrane protein 70, putative p76, ...    28   4.4  
At1g14670.1 68414.m01744 endomembrane protein 70, putative simil...    27   5.8  
At2g45620.1 68415.m05672 nucleotidyltransferase family protein l...    27   7.7  
At2g35170.1 68415.m04314 MORN (Membrane Occupation and Recogniti...    27   7.7  

>At5g35160.1 68418.m04167 endomembrane protein 70, putative p76,
           Homo sapiens, EMBL:HSU81006
          Length = 627

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
 Frame = -1

Query: 254 FFV*ITLSVYLFIYFVIYRLFHL---------LFYSLYSQIFIVLLHTISI*VYLHAIFY 102
           FF   ++++Y+FIY + Y +F L           Y  YS   ++ +   +  V   + F+
Sbjct: 556 FFASGSVAIYIFIYSINYLVFDLKSLSGPVSATLYLGYSLFMVLAIMLATGTVGFLSSFW 615

Query: 101 YVHILYSS 78
           +VH L+SS
Sbjct: 616 FVHYLFSS 623


>At1g14670.1 68414.m01744 endomembrane protein 70, putative similar
           to endomembrane protein emp70 precursor isolog
           GB:AAF67014 GI:7677068 (Homo sapiens)
          Length = 592

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/48 (20%), Positives = 26/48 (54%)
 Frame = -1

Query: 233 SVYLFIYFVIYRLFHLLFYSLYSQIFIVLLHTISI*VYLHAIFYYVHI 90
           ++Y+ +Y++   ++    Y++YS +FIV +  I +  ++     Y  +
Sbjct: 463 AIYIELYYIFASVWGHRIYTIYSILFIVFIILIIVTAFITVALTYFQL 510


>At2g45620.1 68415.m05672 nucleotidyltransferase family protein low
           similarity to SP|O13833| Caffeine-induced death protein
           1 {Schizosaccharomyces pombe}; contains Pfam profiles
           PF03828: PAP/25A associated domain, PF01909:
           Nucleotidyltransferase domain
          Length = 764

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 302 KIRLIKISYKTFRNKIHKYGYRTRVSGEILI*YKENIQKQNEL 430
           K R++K+ Y   RN IH+Y        + LI  +E ++KQ +L
Sbjct: 417 KARMVKM-YMACRNDIHRYDATFIAIYKSLIPAEEELEKQRQL 458


>At2g35170.1 68415.m04314 MORN (Membrane Occupation and Recognition
           Nexus) repeat-containing protein
           /phosphatidylinositol-4-phosphate 5-kinase-related low
           similarity to phosphatidylinositol-4-phosphate 5-kinase
           AtPIP5K1 [Arabidopsis thaliana] GI:3702691; contains
           Pfam profile PF02493: MORN repeat
          Length = 484

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = -1

Query: 257 VFFV*ITLSVYLFIYFVIYRLFHLLFYSLYSQIFIVLLHTISI*VYLHAIFYYVHILYSS 78
           +FF+ I L ++L + FVI  L  +L  SL       L H  SI +++  +  ++   +SS
Sbjct: 138 IFFLVINLRIFLRLVFVIIALSFILSISLR----FALPHLTSIRLFVARLLTFIPARFSS 193


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,290,725
Number of Sequences: 28952
Number of extensions: 101141
Number of successful extensions: 218
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)