Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312A05f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0046 - 17482792-17483124                                         27   6.9  
04_04_1479 - 33888521-33888853                                         27   6.9  
02_05_1204 + 34936696-34936698,34936809-34936944,34937794-349378...    27   6.9  

>05_04_0046 - 17482792-17483124
          Length = 110

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 278 NYGSYKVRCAICRTIGKETSNAC 210
           NYGS++ RC IC  +G   +  C
Sbjct: 50  NYGSFQGRCVICGGVGISDAYYC 72


>04_04_1479 - 33888521-33888853
          Length = 110

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 278 NYGSYKVRCAICRTIGKETSNAC 210
           NYGS++ RC IC  +G   +  C
Sbjct: 50  NYGSFQGRCVICGGVGISDAYYC 72


>02_05_1204 +
           34936696-34936698,34936809-34936944,34937794-34937895,
           34938153-34938199
          Length = 95

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = -1

Query: 521 HSPKPQCARRVFETMXQFCFHCRFCSANFTA*HFFSVFVYRKT*RVTSSMCWSR*VLKSY 342
           H+   +C RR F      C  C + +A     + +SV   R+    T  M + R V K +
Sbjct: 16  HTLCVRCGRRSFHLQKSTCSSCGYPAARIRK-YNWSVKAIRRKTTGTGRMRYLRHVPKRF 74

Query: 341 KNNY 330
           K+N+
Sbjct: 75  KSNF 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,511,943
Number of Sequences: 37544
Number of extensions: 194275
Number of successful extensions: 375
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)