Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312A02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0201 - 14768341-14768524,14768720-14768838                       29   3.0  
07_03_1762 - 29299328-29299437,29299782-29299871,29300487-293012...    28   4.0  
06_01_0068 - 572964-573323                                             28   4.0  
08_01_0397 - 3509186-3510291,3510322-3512335                           27   6.9  
03_01_0348 + 2739523-2741006,2742046-2742232                           27   6.9  
07_01_0678 - 5103836-5104613,5104697-5104888,5104994-5105036,510...    27   9.1  

>11_04_0201 - 14768341-14768524,14768720-14768838
          Length = 100

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 183 HHLDADGRRPAAGVQEAGERRQRDREED 266
           +H + +GRR AA ++ A  +R   REED
Sbjct: 57  NHQNTEGRRSAAAMRTATRQRDAKREED 84


>07_03_1762 -
           29299328-29299437,29299782-29299871,29300487-29301291,
           29301956-29303278
          Length = 775

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -1

Query: 335 RTVVPRLVGQNVRKPSRSWCEN-GIFFSISLTALTSLLYTCCRSPPICIEMMRRWS 171
           RT + R VG+  ++P  +W +  GI  S    A    +  CC +   C   +  WS
Sbjct: 347 RTFLSRRVGEKGKEPEEAWKQTCGICLSEEQRATIQGVLNCC-AHYFCFACIMEWS 401


>06_01_0068 - 572964-573323
          Length = 119

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 213 AAGVQEAGERRQRDRE-EDPVLAPRPARLPHVLPDQPGHH 329
           AAG     ERRQR R+ E+  L   P  L  VL  +  HH
Sbjct: 3   AAGAGRLRERRQRRRQREERQLRDEPLHLRRVLRQRGTHH 42


>08_01_0397 - 3509186-3510291,3510322-3512335
          Length = 1039

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 8/36 (22%)
 Frame = +3

Query: 183 HHLDADGRRPAAG--------VQEAGERRQRDREED 266
           HH DA+   PA+G        V+EA  RRQ+ +EE+
Sbjct: 130 HHRDAEPEGPASGAREEEVVDVEEAERRRQKKKEEE 165


>03_01_0348 + 2739523-2741006,2742046-2742232
          Length = 556

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 246 QRDREEDPVLAPRPARLPHVLP 311
           +R+RE  P+L P P  LP VLP
Sbjct: 19  RRNREPLPLLRPPPRPLPRVLP 40


>07_01_0678 -
           5103836-5104613,5104697-5104888,5104994-5105036,
           5105712-5105835,5105924-5106016,5106754-5106931,
           5107032-5107138,5108098-5108179,5108277-5108314,
           5108409-5108495,5109025-5109135,5109282-5109773
          Length = 774

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 213 AAGVQEAGERRQRDREEDPVLAPRPARLPHVLP 311
           AA  +E  E++Q+  EE+   AP PA  P   P
Sbjct: 54  AAEGEEEEEKKQQREEEEEAPAPAPAPAPEPAP 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,119,686
Number of Sequences: 37544
Number of extensions: 185517
Number of successful extensions: 956
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)