Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS311H12f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 94 6e-20
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 94 6e-20
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 80 1e-15
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 77 5e-15
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 74 5e-14
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 70 8e-13
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 67 8e-12
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 64 4e-11
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 61 5e-10
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 60 1e-09
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 60 1e-09
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 60 1e-09
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 60 1e-09
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 60 1e-09
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 58 4e-09
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 58 5e-09
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 58 5e-09
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 58 5e-09
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 57 6e-09
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 57 6e-09
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 57 6e-09
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 57 6e-09
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 56 1e-08
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 56 1e-08
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 56 1e-08
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 56 2e-08
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 55 3e-08
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 55 3e-08
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 55 3e-08
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 55 3e-08
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 55 3e-08
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 54 8e-08
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 54 8e-08
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 53 1e-07
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 53 1e-07
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 52 2e-07
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 52 2e-07
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 52 2e-07
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 52 2e-07
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 52 2e-07
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 52 2e-07
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 52 2e-07
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 51 4e-07
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 50 7e-07
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 50 7e-07
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 50 7e-07
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 50 7e-07
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 50 9e-07
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 49 2e-06
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 49 2e-06
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 49 2e-06
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 49 2e-06
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 49 2e-06
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 49 2e-06
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 49 2e-06
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 49 2e-06
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 49 2e-06
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 48 3e-06
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 48 3e-06
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 48 4e-06
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 48 4e-06
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 48 4e-06
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 48 5e-06
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 48 5e-06
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 47 7e-06
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 47 7e-06
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 47 7e-06
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 47 9e-06
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 47 9e-06
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 46 1e-05
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 46 1e-05
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 46 1e-05
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 46 1e-05
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 46 2e-05
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 46 2e-05
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 46 2e-05
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 46 2e-05
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 46 2e-05
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 45 3e-05
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 45 3e-05
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 45 3e-05
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 45 3e-05
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 45 3e-05
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 45 4e-05
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 45 4e-05
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 45 4e-05
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 44 5e-05
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 44 5e-05
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 44 5e-05
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 44 5e-05
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 44 5e-05
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 44 5e-05
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 44 6e-05
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 44 6e-05
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 44 8e-05
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 44 8e-05
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 44 8e-05
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 43 1e-04
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 43 1e-04
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 43 1e-04
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 43 1e-04
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 43 1e-04
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 43 1e-04
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 43 1e-04
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 43 1e-04
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 43 1e-04
At5g51300.2 68418.m06360 splicing factor-related contains simila... 43 1e-04
At5g51300.1 68418.m06359 splicing factor-related contains simila... 43 1e-04
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 42 2e-04
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 42 2e-04
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 42 2e-04
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 42 3e-04
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 42 3e-04
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 42 3e-04
At2g47310.1 68415.m05906 flowering time control protein-related ... 42 3e-04
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 41 4e-04
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 41 4e-04
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 41 4e-04
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 41 4e-04
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 41 4e-04
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 41 4e-04
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 41 6e-04
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 41 6e-04
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 41 6e-04
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 41 6e-04
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 41 6e-04
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 41 6e-04
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 41 6e-04
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 40 8e-04
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 40 8e-04
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 40 8e-04
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 40 8e-04
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 40 8e-04
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 40 8e-04
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 40 0.001
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 40 0.001
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 40 0.001
At1g66260.1 68414.m07522 RNA and export factor-binding protein, ... 40 0.001
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 40 0.001
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 40 0.001
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 40 0.001
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 40 0.001
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 40 0.001
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 40 0.001
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 39 0.002
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 39 0.002
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 39 0.002
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 38 0.003
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 38 0.004
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 38 0.004
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 38 0.004
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 38 0.005
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 38 0.005
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 38 0.005
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 37 0.007
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 37 0.007
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 37 0.007
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 37 0.007
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 37 0.007
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 37 0.009
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 37 0.009
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 37 0.009
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 37 0.009
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 36 0.012
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 36 0.017
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 36 0.017
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 36 0.017
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 36 0.022
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 35 0.029
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 35 0.029
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 35 0.029
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 35 0.029
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 35 0.038
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 35 0.038
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 34 0.050
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 34 0.050
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 34 0.050
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 34 0.050
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 34 0.067
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 34 0.067
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 34 0.067
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 34 0.067
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 34 0.067
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 33 0.088
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 33 0.12
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 33 0.12
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 33 0.12
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 33 0.12
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 33 0.12
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 33 0.12
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 33 0.12
At3g09160.1 68416.m01082 RNA recognition motif (RRM)-containing ... 33 0.15
At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing ... 32 0.27
At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing ... 32 0.27
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 32 0.27
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 31 0.36
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 31 0.36
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 31 0.47
At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing ... 30 0.82
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 30 0.82
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 30 0.82
At5g03480.1 68418.m00304 expressed protein ; expression support... 30 1.1
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 30 1.1
At1g63610.2 68414.m07192 expressed protein 30 1.1
At1g63610.1 68414.m07191 expressed protein 30 1.1
At1g47620.1 68414.m05289 cytochrome P450, putative similar to cy... 30 1.1
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 29 1.4
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 29 1.4
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 29 1.9
At4g16280.1 68417.m02469 flowering time control protein / FCA ga... 29 2.5
At5g53700.1 68418.m06672 hypothetical protein 28 4.4
At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing ... 28 4.4
At3g45850.1 68416.m04962 kinesin motor protein-related kinesin-r... 27 5.8
At3g23410.1 68416.m02951 alcohol oxidase-related similar to long... 27 5.8
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 27 7.7
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 93.9 bits (223), Expect = 6e-20
Identities = 45/89 (50%), Positives = 65/89 (73%), Gaps = 1/89 (1%)
Frame = +3
Query: 96 YGRP-PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVR 272
+GR PP I SL V N+T+RTT +DL +F + G+V D++IPRDR T +SRGFAFVR
Sbjct: 4 FGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVR 63
Query: 273 FFERRDAEEALDTMDGRMLDGRELRVQMA 359
+ + +A +A++ +DGR++DGRE+ VQ A
Sbjct: 64 YKYKDEAHKAVERLDGRVVDGREITVQFA 92
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 93.9 bits (223), Expect = 6e-20
Identities = 45/89 (50%), Positives = 65/89 (73%), Gaps = 1/89 (1%)
Frame = +3
Query: 96 YGRP-PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVR 272
+GR PP I SL V N+T+RTT +DL +F + G+V D++IPRDR T +SRGFAFVR
Sbjct: 4 FGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVR 63
Query: 273 FFERRDAEEALDTMDGRMLDGRELRVQMA 359
+ + +A +A++ +DGR++DGRE+ VQ A
Sbjct: 64 YKYKDEAHKAVERLDGRVVDGREITVQFA 92
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 79.8 bits (188), Expect = 1e-15
Identities = 41/76 (53%), Positives = 49/76 (64%)
Frame = +3
Query: 132 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 311
SL V NL + EDLRR FE+ G V DIY+PRD YT + RGF F++F + DA EA
Sbjct: 38 SLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQ 97
Query: 312 MDGRMLDGRELRVQMA 359
MDG +L GREL V A
Sbjct: 98 MDGYLLLGRELTVVFA 113
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 77.4 bits (182), Expect = 5e-15
Identities = 40/76 (52%), Positives = 49/76 (64%)
Frame = +3
Query: 132 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 311
SL V NL + EDLR+ FE+ G V DIY+PRD YT + RGF FV+F + DA +A
Sbjct: 37 SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHH 96
Query: 312 MDGRMLDGRELRVQMA 359
MDG +L GREL V A
Sbjct: 97 MDGYLLLGRELTVVFA 112
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 74.1 bits (174), Expect = 5e-14
Identities = 38/76 (50%), Positives = 48/76 (63%)
Frame = +3
Query: 132 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 311
SL V N+ PE+LR FER G V D+YIPRD Y+ + RGFAFV F + DA EA +
Sbjct: 48 SLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRS 107
Query: 312 MDGRMLDGRELRVQMA 359
M+ R GRE+ V +A
Sbjct: 108 MNRRSFAGREITVVVA 123
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 70.1 bits (164), Expect = 8e-13
Identities = 34/79 (43%), Positives = 47/79 (59%)
Frame = +3
Query: 123 GMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEA 302
G L + NL P DLR FER G + DIY+PR+ YT E RGF FV++ DA EA
Sbjct: 45 GPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEA 104
Query: 303 LDTMDGRMLDGRELRVQMA 359
+ M+ +++ GRE+ + A
Sbjct: 105 MKRMNHKVIGGREIAIVFA 123
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 66.9 bits (156), Expect = 8e-12
Identities = 31/76 (40%), Positives = 49/76 (64%)
Frame = +3
Query: 132 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 311
+L V NL + T D+ +F G+V + + +DR+TR+SRG AFV + R DA +A +
Sbjct: 58 TLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARS 117
Query: 312 MDGRMLDGRELRVQMA 359
MD ++L+GR+L V +A
Sbjct: 118 MDAKILNGRKLTVSIA 133
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 64.5 bits (150), Expect = 4e-11
Identities = 32/72 (44%), Positives = 43/72 (59%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V NL+ TT + LR F G V D + RDRYT SRGF FV + +AE A+ MDG
Sbjct: 7 VGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDG 66
Query: 321 RMLDGRELRVQM 356
+ L+GR + V++
Sbjct: 67 KELNGRRVSVKL 78
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 60.9 bits (141), Expect = 5e-10
Identities = 30/75 (40%), Positives = 43/75 (57%)
Frame = +3
Query: 111 PRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRD 290
P+ + +L V L+ RTT E LR F + GEV D + DR + S+GF FVR+ D
Sbjct: 50 PQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLED 109
Query: 291 AEEALDTMDGRMLDG 335
+ + + MDG+ LDG
Sbjct: 110 SAKGIAGMDGKFLDG 124
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 59.7 bits (138), Expect = 1e-09
Identities = 27/70 (38%), Positives = 42/70 (60%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
+ N+++ TT E L +F R GE+ I + D+ T+ GF FV F+ R D E+A+ + G
Sbjct: 38 IGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYISG 97
Query: 321 RMLDGRELRV 350
+LD R +RV
Sbjct: 98 TILDDRPIRV 107
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 59.7 bits (138), Expect = 1e-09
Identities = 30/73 (41%), Positives = 43/73 (58%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V L + T EDL+R F + G+V D I DR + SRGF FV F + + +A++ M+G
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNG 69
Query: 321 RMLDGRELRVQMA 359
+ LDGR + V A
Sbjct: 70 KELDGRVITVNEA 82
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 59.7 bits (138), Expect = 1e-09
Identities = 30/73 (41%), Positives = 43/73 (58%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V L + T EDL+R F + G+V D I DR + SRGF FV F + + +A++ M+G
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNG 69
Query: 321 RMLDGRELRVQMA 359
+ LDGR + V A
Sbjct: 70 KELDGRVITVNEA 82
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 59.7 bits (138), Expect = 1e-09
Identities = 30/73 (41%), Positives = 43/73 (58%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V L + T EDL+R F + G+V D I DR + SRGF FV F + + +A++ M+G
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNG 69
Query: 321 RMLDGRELRVQMA 359
+ LDGR + V A
Sbjct: 70 KELDGRVITVNEA 82
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 59.7 bits (138), Expect = 1e-09
Identities = 26/75 (34%), Positives = 48/75 (64%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 314
+ V NL + T+ + L+R F GE+ ++ + +D + S+G+AF++F + DA A++TM
Sbjct: 42 IMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETM 101
Query: 315 DGRMLDGRELRVQMA 359
D RM +GR + + +A
Sbjct: 102 DRRMYNGRMIYIDIA 116
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 58.0 bits (134), Expect = 4e-09
Identities = 27/75 (36%), Positives = 47/75 (62%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 314
L V L+ TT + LR++F G++ + + RD T+ +GF F+ F DA +AL ++
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68
Query: 315 DGRMLDGRELRVQMA 359
DG+++DGR + V++A
Sbjct: 69 DGKIVDGRLIFVEVA 83
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 57.6 bits (133), Expect = 5e-09
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Frame = +3
Query: 75 SILFKMSYGRPPPRIDG-MVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 251
S L S PP G L V L++RTT + LR FE+ G + + + D+
Sbjct: 58 SCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRP 117
Query: 252 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 359
+GFAF+R+ +A +A+ M G+ LDGR + V+ A
Sbjct: 118 KGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEA 153
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 57.6 bits (133), Expect = 5e-09
Identities = 29/75 (38%), Positives = 43/75 (57%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 314
L V NL++ T E L F CG+V + D T SRG+ FV + + + E AL+++
Sbjct: 179 LFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESL 238
Query: 315 DGRMLDGRELRVQMA 359
DG L+GR +RV +A
Sbjct: 239 DGFELEGRAIRVNLA 253
Score = 39.5 bits (88), Expect = 0.001
Identities = 25/85 (29%), Positives = 37/85 (43%)
Frame = +3
Query: 105 PPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFER 284
PP ++ L NL Y L ++ + + + +R T +SRGFAFV
Sbjct: 79 PPAAVN--TKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNV 136
Query: 285 RDAEEALDTMDGRMLDGRELRVQMA 359
D +D +DG GR L+V A
Sbjct: 137 EDCNIIIDNLDGTEYLGRALKVNFA 161
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 57.6 bits (133), Expect = 5e-09
Identities = 29/76 (38%), Positives = 44/76 (57%)
Frame = +3
Query: 132 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 311
SL V L++R T DL F + G+V D+++ D +TRESRGF F+ DA + +
Sbjct: 76 SLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRS 135
Query: 312 MDGRMLDGRELRVQMA 359
+D +L GR + V+ A
Sbjct: 136 LDHSVLQGRVITVEKA 151
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 57.2 bits (132), Expect = 6e-09
Identities = 30/75 (40%), Positives = 42/75 (56%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 314
L V L++ T L++ F GEV + + DR T SRGF FV F A A+ M
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 315 DGRMLDGRELRVQMA 359
DG+ L+GR++RV +A
Sbjct: 97 DGKELNGRQIRVNLA 111
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 57.2 bits (132), Expect = 6e-09
Identities = 30/75 (40%), Positives = 42/75 (56%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 314
L V L++ T L++ F GEV + + DR T SRGF FV F A A+ M
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 315 DGRMLDGRELRVQMA 359
DG+ L+GR++RV +A
Sbjct: 97 DGKELNGRQIRVNLA 111
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 57.2 bits (132), Expect = 6e-09
Identities = 30/76 (39%), Positives = 43/76 (56%)
Frame = +3
Query: 132 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 311
S++V NL+ T DL +F G V +Y+ D+ T SRGF FV F R DA+ A++
Sbjct: 214 SVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINK 273
Query: 312 MDGRMLDGRELRVQMA 359
++G D LRV+ A
Sbjct: 274 LNGYGYDNLILRVEWA 289
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 57.2 bits (132), Expect = 6e-09
Identities = 30/75 (40%), Positives = 41/75 (54%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 314
L + L++ + L+ F GEV ++ I D+ + SRGF FV F E DA A D M
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102
Query: 315 DGRMLDGRELRVQMA 359
DG+ L GR LR+ A
Sbjct: 103 DGKGLLGRPLRISFA 117
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 56.4 bits (130), Expect = 1e-08
Identities = 28/74 (37%), Positives = 43/74 (58%)
Frame = +3
Query: 132 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 311
SL V L++R T DL F + G+V D+++ D +TRESRGF F+ DA + +
Sbjct: 46 SLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRS 105
Query: 312 MDGRMLDGRELRVQ 353
+D +L GR + V+
Sbjct: 106 LDHSVLQGRVITVE 119
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 56.0 bits (129), Expect = 1e-08
Identities = 27/75 (36%), Positives = 43/75 (57%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 314
L + NL ++ P D++ VF G V D++IP++ T +GFAFV+F ++DA A+
Sbjct: 333 LIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKF 392
Query: 315 DGRMLDGRELRVQMA 359
+G M R + V A
Sbjct: 393 NGHMFGKRPIAVDWA 407
Score = 46.4 bits (105), Expect = 1e-05
Identities = 23/73 (31%), Positives = 36/73 (49%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V L Y T L F G V ++ ++ + E RGFAFV+F + D A++ +G
Sbjct: 24 VSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELKNG 83
Query: 321 RMLDGRELRVQMA 359
+ GR + V+ A
Sbjct: 84 STVGGRRITVKQA 96
Score = 36.7 bits (81), Expect = 0.009
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Frame = +3
Query: 132 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 311
+L + NL + T E++++ F GEV + + + T+ G AFV+F + A+
Sbjct: 562 TLFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKTADASVAAISA 621
Query: 312 MD-----GRMLDGRELRVQMA 359
D G +L GR+L V A
Sbjct: 622 ADTASGVGVLLKGRQLNVMRA 642
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 56.0 bits (129), Expect = 1e-08
Identities = 32/73 (43%), Positives = 40/73 (54%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V ++Y T LR F + GEV D I DR T SRGFAFV F +A A+ +DG
Sbjct: 38 VGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDG 96
Query: 321 RMLDGRELRVQMA 359
+ L GR +RV A
Sbjct: 97 QDLHGRRIRVNYA 109
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 55.6 bits (128), Expect = 2e-08
Identities = 29/75 (38%), Positives = 38/75 (50%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 314
L + + Y + LR F + GEV D + DR T SRGF FV F A A+ +
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101
Query: 315 DGRMLDGRELRVQMA 359
DGR L GR ++V A
Sbjct: 102 DGRDLHGRVVKVNYA 116
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 55.2 bits (127), Expect = 3e-08
Identities = 27/75 (36%), Positives = 43/75 (57%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 314
L + L++ TT + L F +CG+V + I DR + S+GF FV F +A++AL
Sbjct: 36 LFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEF 95
Query: 315 DGRMLDGRELRVQMA 359
+G+ L+GR + V A
Sbjct: 96 NGQQLNGRTIFVDYA 110
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 54.8 bits (126), Expect = 3e-08
Identities = 29/86 (33%), Positives = 43/86 (50%)
Frame = +3
Query: 102 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 281
R P D + V NL + L R+F G+V D + DR T SRGF FV+
Sbjct: 198 RQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSN 257
Query: 282 RRDAEEALDTMDGRMLDGRELRVQMA 359
+ A+ +DG+ L+GR ++V +A
Sbjct: 258 ENEVNVAIAALDGQNLEGRAIKVNVA 283
Score = 43.6 bits (98), Expect = 8e-05
Identities = 26/75 (34%), Positives = 39/75 (52%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 314
L V NL Y + L +FE+ G V + +R T +SRGF FV +AE+A++
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF 174
Query: 315 DGRMLDGRELRVQMA 359
+ ++GR L V A
Sbjct: 175 NSFEVNGRRLTVNRA 189
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 54.8 bits (126), Expect = 3e-08
Identities = 30/75 (40%), Positives = 40/75 (53%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 314
L + L++ T LR F G+V D + DR T SRGF FV F + A A+ M
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 315 DGRMLDGRELRVQMA 359
DG+ L+GR +RV A
Sbjct: 97 DGKELNGRHIRVNPA 111
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 54.8 bits (126), Expect = 3e-08
Identities = 30/75 (40%), Positives = 40/75 (53%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 314
L + L++ T LR F G+V D + DR T SRGF FV F + A A+ M
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 315 DGRMLDGRELRVQMA 359
DG+ L+GR +RV A
Sbjct: 97 DGKELNGRHIRVNPA 111
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 54.8 bits (126), Expect = 3e-08
Identities = 25/73 (34%), Positives = 42/73 (57%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
+ L + T+ LR FE+ G + + + D+++ SRGF F+ F E++ +EA+ M+G
Sbjct: 11 IGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNG 70
Query: 321 RMLDGRELRVQMA 359
LDGR + V A
Sbjct: 71 MDLDGRTITVDKA 83
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 53.6 bits (123), Expect = 8e-08
Identities = 23/79 (29%), Positives = 43/79 (54%)
Frame = +3
Query: 120 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEE 299
D +L V L Y ++ ++R FE G + +++ D+ T + +G+AF+ + RD +
Sbjct: 135 DPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKA 194
Query: 300 ALDTMDGRMLDGRELRVQM 356
A DG+ +DGR + V +
Sbjct: 195 AYKQADGQKIDGRRVLVDV 213
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 53.6 bits (123), Expect = 8e-08
Identities = 28/71 (39%), Positives = 37/71 (52%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V L + T + + R F GEV D I DR T S+GF FV F + A+D M+G
Sbjct: 48 VGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMNG 107
Query: 321 RMLDGRELRVQ 353
+ LDGR + Q
Sbjct: 108 QELDGRNITAQ 118
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 53.2 bits (122), Expect = 1e-07
Identities = 29/76 (38%), Positives = 37/76 (48%)
Frame = +3
Query: 132 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 311
+L V L L F G++ D+ P D+ ++ R F FV F ER DA A+D
Sbjct: 14 TLYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDN 73
Query: 312 MDGRMLDGRELRVQMA 359
MDG L GR L V A
Sbjct: 74 MDGAELYGRVLTVNYA 89
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 52.8 bits (121), Expect = 1e-07
Identities = 28/73 (38%), Positives = 38/73 (52%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V L+ T DL R F R G++ D I +R T SRGF F+ F +RR +E++ M G
Sbjct: 11 VGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMHG 70
Query: 321 RMLDGRELRVQMA 359
R R + V A
Sbjct: 71 RDFGDRVISVNRA 83
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 52.4 bits (120), Expect = 2e-07
Identities = 28/73 (38%), Positives = 40/73 (54%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V L + T L F + G+V D I DR T SRGF FV F + + ++A++ M+G
Sbjct: 12 VGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNG 71
Query: 321 RMLDGRELRVQMA 359
+ LDGR + V A
Sbjct: 72 QDLDGRSITVNEA 84
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 52.4 bits (120), Expect = 2e-07
Identities = 28/73 (38%), Positives = 40/73 (54%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V L + T L F + G+V D I DR T SRGF FV F + + ++A++ M+G
Sbjct: 12 VGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNG 71
Query: 321 RMLDGRELRVQMA 359
+ LDGR + V A
Sbjct: 72 QDLDGRSITVNEA 84
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 52.0 bits (119), Expect = 2e-07
Identities = 28/74 (37%), Positives = 41/74 (55%)
Frame = +3
Query: 132 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 311
S++V NL+ T DL +F G V ++ D+ T SRGF FV F R DA+ A++
Sbjct: 175 SVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINK 234
Query: 312 MDGRMLDGRELRVQ 353
++G D LRV+
Sbjct: 235 LNGYGYDNLILRVE 248
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 52.0 bits (119), Expect = 2e-07
Identities = 26/72 (36%), Positives = 38/72 (52%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 314
L V NL Y T +L ++F G V D+ I D+ T SRGF FV +A+EA+
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 315 DGRMLDGRELRV 350
+ + GR ++V
Sbjct: 178 NSSQIGGRTVKV 189
Score = 44.4 bits (100), Expect = 5e-05
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +3
Query: 117 IDGMVSLKVDNLTYRTTPEDLRRVF-ERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDA 293
+D + NL + T + L+ F ++ G +G I +R T SRGF F+ F +
Sbjct: 215 VDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVI-YERNTGRSRGFGFISFESAENV 273
Query: 294 EEALDTMDGRMLDGRELRVQMA 359
+ AL TM+G ++GR LR+ +A
Sbjct: 274 QSALATMNGVEVEGRALRLNLA 295
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 52.0 bits (119), Expect = 2e-07
Identities = 24/70 (34%), Positives = 44/70 (62%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V + + T DL VF + GE+ D+ + RD+ T +S+GFAF+ + ++R A+D ++G
Sbjct: 40 VGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNG 99
Query: 321 RMLDGRELRV 350
++ GR ++V
Sbjct: 100 ALVLGRTIKV 109
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 52.0 bits (119), Expect = 2e-07
Identities = 27/73 (36%), Positives = 40/73 (54%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V NLT+RTT +DLRR FE+ G+V D + + Y S+G+ F+ F + AL
Sbjct: 16 VGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQN-SK 74
Query: 321 RMLDGRELRVQMA 359
++DGR +A
Sbjct: 75 PIIDGRTTNCNLA 87
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 52.0 bits (119), Expect = 2e-07
Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Frame = +3
Query: 111 PRID---GMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 281
PR D G L V L+ RT DL R+F R G V D+ + RD +AFV F +
Sbjct: 2 PRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD--------YAFVEFGD 53
Query: 282 RRDAEEALDTMDGRMLDGRELRVQMA 359
RDA++A +DGR DG + V+ +
Sbjct: 54 PRDADDARHYLDGRDFDGSRITVEFS 79
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 51.2 bits (117), Expect = 4e-07
Identities = 33/84 (39%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Frame = +3
Query: 111 PRID---GMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 281
PR D G L V L+ RT DL R+F R G V D+ + RD +AFV F +
Sbjct: 2 PRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD--------YAFVEFSD 53
Query: 282 RRDAEEALDTMDGRMLDGRELRVQ 353
RDA++A +DGR DG + V+
Sbjct: 54 PRDADDARYYLDGRDFDGSRITVE 77
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 50.4 bits (115), Expect = 7e-07
Identities = 27/73 (36%), Positives = 44/73 (60%)
Frame = +3
Query: 132 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 311
S+ V N+ Y TPE++++ F+ CG V + I D++ + +GFA+V F E +EAL
Sbjct: 93 SVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKF-GQPKGFAYVEFVEVEAVQEALQL 151
Query: 312 MDGRMLDGRELRV 350
+ L GR+L+V
Sbjct: 152 NESE-LHGRQLKV 163
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 50.4 bits (115), Expect = 7e-07
Identities = 27/73 (36%), Positives = 43/73 (58%)
Frame = +3
Query: 132 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 311
S+ V N+ Y TPE+++ F+ CG V + I D++ + +GFA+V F E +EAL
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKF-GQPKGFAYVEFVEVEAVQEALQL 148
Query: 312 MDGRMLDGRELRV 350
+ L GR+L+V
Sbjct: 149 NESE-LHGRQLKV 160
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 50.4 bits (115), Expect = 7e-07
Identities = 27/73 (36%), Positives = 43/73 (58%)
Frame = +3
Query: 132 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 311
S+ V N+ Y TPE+++ F+ CG V + I D++ + +GFA+V F E +EAL
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKF-GQPKGFAYVEFVEVEAVQEALQL 148
Query: 312 MDGRMLDGRELRV 350
+ L GR+L+V
Sbjct: 149 NESE-LHGRQLKV 160
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 50.4 bits (115), Expect = 7e-07
Identities = 28/86 (32%), Positives = 44/86 (51%)
Frame = +3
Query: 102 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 281
R P + + V NL + L ++F G+V + + DR T SRGF FV +
Sbjct: 235 RAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSD 294
Query: 282 RRDAEEALDTMDGRMLDGRELRVQMA 359
+ EA+ +DG+ L+GR +RV +A
Sbjct: 295 VDELNEAISALDGQNLEGRAIRVNVA 320
Score = 43.2 bits (97), Expect = 1e-04
Identities = 27/75 (36%), Positives = 38/75 (50%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 314
L V NL Y + L +FE+ G V + +R T +SRGF FV +AE A++
Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKF 211
Query: 315 DGRMLDGRELRVQMA 359
+ L+GR L V A
Sbjct: 212 NRYDLNGRLLTVNKA 226
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 50.0 bits (114), Expect = 9e-07
Identities = 30/80 (37%), Positives = 41/80 (51%)
Frame = +3
Query: 111 PRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRD 290
P G L V NL + +DLR+VFE G V + +PRD T +GF FV+F D
Sbjct: 279 PYSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFARLED 337
Query: 291 AEEALDTMDGRMLDGRELRV 350
A AL+ + GR ++V
Sbjct: 338 ARNALNLNGQLEIAGRAIKV 357
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 49.2 bits (112), Expect = 2e-06
Identities = 24/74 (32%), Positives = 43/74 (58%)
Frame = +3
Query: 132 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 311
SL V + + L++VF G+V ++ I + TR+S G+ +V F + DA+ A++
Sbjct: 78 SLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEA 137
Query: 312 MDGRMLDGRELRVQ 353
M+G+ DGR + V+
Sbjct: 138 MNGKFFDGRFILVK 151
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 49.2 bits (112), Expect = 2e-06
Identities = 24/60 (40%), Positives = 35/60 (58%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V L + T EDL+R F + G+V D I DR + SRGF FV F + + +A++ M+G
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNG 69
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 49.2 bits (112), Expect = 2e-06
Identities = 28/83 (33%), Positives = 42/83 (50%)
Frame = +3
Query: 111 PRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRD 290
P G +L NL++ D+ F+ GEV D+ +R RGF V F +
Sbjct: 291 PAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEE 350
Query: 291 AEEALDTMDGRMLDGRELRVQMA 359
A++AL+ GR L GRE+R+ +A
Sbjct: 351 AQKALE-FHGRPLLGREIRLDIA 372
Score = 38.3 bits (85), Expect = 0.003
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +3
Query: 177 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMD 317
LR F CGE+ ++ +P DR T S+G A++ F E ++ L+ D
Sbjct: 421 LREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSEGKEKALELNGSD 467
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 48.8 bits (111), Expect = 2e-06
Identities = 26/81 (32%), Positives = 40/81 (49%)
Frame = +3
Query: 117 IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAE 296
+D + V NL T E L +F G+V + R T +S GF FV F D E
Sbjct: 173 VDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVE 232
Query: 297 EALDTMDGRMLDGRELRVQMA 359
A+ ++ +L+G+++RV A
Sbjct: 233 AAIVALNNSLLEGQKIRVNKA 253
Score = 44.8 bits (101), Expect = 4e-05
Identities = 20/72 (27%), Positives = 37/72 (51%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
+ N+ T E L ++ E G V + + D+Y+ SR F F DA ++ ++G
Sbjct: 80 IGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKLNG 139
Query: 321 RMLDGRELRVQM 356
++GRE++V +
Sbjct: 140 NTVEGREIKVNI 151
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 48.8 bits (111), Expect = 2e-06
Identities = 27/74 (36%), Positives = 36/74 (48%)
Frame = +3
Query: 129 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 308
+ L V NL + L ++FE G V + + D+ T SRGF FV + E A
Sbjct: 91 LKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQ 150
Query: 309 TMDGRMLDGRELRV 350
+G LDGR LRV
Sbjct: 151 QFNGYELDGRPLRV 164
Score = 48.4 bits (110), Expect = 3e-06
Identities = 24/73 (32%), Positives = 41/73 (56%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V NL++ L +F G+V + + DR + S+GF FV + ++ + A+ ++DG
Sbjct: 208 VGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDG 267
Query: 321 RMLDGRELRVQMA 359
LDGR++RV A
Sbjct: 268 ADLDGRQIRVSEA 280
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 48.8 bits (111), Expect = 2e-06
Identities = 25/73 (34%), Positives = 38/73 (52%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V L++ T L F+R G++ + I R T RGF F+ F +RR A++A+ M G
Sbjct: 16 VGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHG 75
Query: 321 RMLDGRELRVQMA 359
R L + + V A
Sbjct: 76 RELGNKVISVNKA 88
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 48.8 bits (111), Expect = 2e-06
Identities = 25/73 (34%), Positives = 38/73 (52%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V L++ T L F+R G++ + I R T RGF F+ F +RR A++A+ M G
Sbjct: 16 VGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHG 75
Query: 321 RMLDGRELRVQMA 359
R L + + V A
Sbjct: 76 RELGNKVISVNKA 88
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 48.8 bits (111), Expect = 2e-06
Identities = 26/71 (36%), Positives = 37/71 (52%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 314
L VD+L+ L+ +F GEV + I DR RG +V F R DAE+A M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 315 DGRMLDGRELR 347
DG +DG+ ++
Sbjct: 160 DGAQIDGKVVK 170
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 48.8 bits (111), Expect = 2e-06
Identities = 26/71 (36%), Positives = 37/71 (52%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 314
L VD+L+ L+ +F GEV + I DR RG +V F R DAE+A M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 315 DGRMLDGRELR 347
DG +DG+ ++
Sbjct: 160 DGAQIDGKVVK 170
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 48.4 bits (110), Expect = 3e-06
Identities = 25/69 (36%), Positives = 39/69 (56%)
Frame = +3
Query: 132 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 311
+L V L+ R T +DL F + G+V ++ + TR SRGFAFV +DAE +
Sbjct: 73 TLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKY 132
Query: 312 MDGRMLDGR 338
++ +L+GR
Sbjct: 133 LNQSVLEGR 141
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 48.4 bits (110), Expect = 3e-06
Identities = 25/69 (36%), Positives = 39/69 (56%)
Frame = +3
Query: 132 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 311
+L V L+ R T +DL F + G+V ++ + TR SRGFAFV +DAE +
Sbjct: 72 TLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKY 131
Query: 312 MDGRMLDGR 338
++ +L+GR
Sbjct: 132 LNQSVLEGR 140
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 48.0 bits (109), Expect = 4e-06
Identities = 24/75 (32%), Positives = 43/75 (57%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 314
L V NL++ L +F G+V + + DR + S+GF FV ++ ++A++++
Sbjct: 251 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 310
Query: 315 DGRMLDGRELRVQMA 359
+G LDGR++RV A
Sbjct: 311 NGADLDGRQIRVSEA 325
Score = 46.8 bits (106), Expect = 9e-06
Identities = 25/74 (33%), Positives = 36/74 (48%)
Frame = +3
Query: 129 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 308
+ L V NL++ L ++FE G V + + D+ T SRGF FV + E A
Sbjct: 99 LKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQ 158
Query: 309 TMDGRMLDGRELRV 350
+G +GR LRV
Sbjct: 159 QFNGYEFEGRPLRV 172
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 48.0 bits (109), Expect = 4e-06
Identities = 24/75 (32%), Positives = 43/75 (57%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 314
L V NL++ L +F G+V + + DR + S+GF FV ++ ++A++++
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 315 DGRMLDGRELRVQMA 359
+G LDGR++RV A
Sbjct: 319 NGADLDGRQIRVSEA 333
Score = 46.8 bits (106), Expect = 9e-06
Identities = 25/74 (33%), Positives = 36/74 (48%)
Frame = +3
Query: 129 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 308
+ L V NL++ L ++FE G V + + D+ T SRGF FV + E A
Sbjct: 99 LKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQ 158
Query: 309 TMDGRMLDGRELRV 350
+G +GR LRV
Sbjct: 159 QFNGYEFEGRPLRV 172
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 48.0 bits (109), Expect = 4e-06
Identities = 23/75 (30%), Positives = 45/75 (60%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 314
L + L++ T+ + LR FE GE+ ++ I D+ ++ S+G+AF+ + A AL M
Sbjct: 284 LFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEM 343
Query: 315 DGRMLDGRELRVQMA 359
+G++++G + V +A
Sbjct: 344 NGKIINGWMIVVDVA 358
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 47.6 bits (108), Expect = 5e-06
Identities = 25/75 (33%), Positives = 41/75 (54%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 314
L N+ + +TPED+R +FE+ G V DI + + R +RG F+ +A AL ++
Sbjct: 96 LIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKER-NRGLVFIEMASPEEAATALKSL 154
Query: 315 DGRMLDGRELRVQMA 359
+ +GR L+V A
Sbjct: 155 ESCEYEGRRLKVDYA 169
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 47.6 bits (108), Expect = 5e-06
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 314
L V L E LR F + + D+ + RD++T SRGFAFV F+ DA +AL+
Sbjct: 460 LVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEAT 519
Query: 315 DGRMLD--GRELRVQMA 359
+ L+ G+ LRV A
Sbjct: 520 NRTALERNGKILRVAYA 536
Score = 41.5 bits (93), Expect = 3e-04
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM-- 314
V L+ ++T EDL ++ G + + + R++ + SRGFAF+ F A +D +
Sbjct: 302 VKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVDAARTMMDRIEH 361
Query: 315 DGRMLDGREL 344
DG +LDGR+L
Sbjct: 362 DGIVLDGRKL 371
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 47.2 bits (107), Expect = 7e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 132 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 311
S+ V N+ Y TPE++++ F+ CG V + I D++ + +GFA+V F E + +L
Sbjct: 104 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEVEAVQNSL-I 161
Query: 312 MDGRMLDGRELRV 350
++ L GR+++V
Sbjct: 162 LNESELHGRQIKV 174
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 47.2 bits (107), Expect = 7e-06
Identities = 26/86 (30%), Positives = 46/86 (53%)
Frame = +3
Query: 93 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVR 272
+Y PP ++ V NL T E+L++ F + GEV + IP ++G+ +V+
Sbjct: 225 AYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIP------ATKGYGYVQ 278
Query: 273 FFERRDAEEALDTMDGRMLDGRELRV 350
F R AEEA+ M G+++ + +R+
Sbjct: 279 FKTRPSAEEAVQRMQGQVIGQQAVRI 304
Score = 31.1 bits (67), Expect = 0.47
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 231 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 359
D T S+G+ FV+F E + A+ M+G R +R+ A
Sbjct: 151 DPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAA 193
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 47.2 bits (107), Expect = 7e-06
Identities = 27/92 (29%), Positives = 44/92 (47%)
Frame = +3
Query: 84 FKMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 263
F+M G + + V L + T + +RR FE+ GE+ + + D+ T S+G+
Sbjct: 7 FQMEGGNNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYG 66
Query: 264 FVRFFERRDAEEALDTMDGRMLDGRELRVQMA 359
FV F E A A M+ ++DGR +A
Sbjct: 67 FVTFKEAEAAMRACQNMN-PVIDGRRANCNLA 97
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 46.8 bits (106), Expect = 9e-06
Identities = 22/62 (35%), Positives = 38/62 (61%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 314
L V +L + T +++ +F + G V D+Y+ RD Y R+SRG FV++ + A A+D +
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEY-RQSRGCGFVKYSSKETAMAAIDGL 271
Query: 315 DG 320
+G
Sbjct: 272 NG 273
Score = 39.5 bits (88), Expect = 0.001
Identities = 18/66 (27%), Positives = 38/66 (57%)
Frame = +3
Query: 129 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 308
V L V ++ T E++R FE+ G V ++ + +D+ T + +G FV++ +DA+ A+
Sbjct: 120 VKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIR 179
Query: 309 TMDGRM 326
+ ++
Sbjct: 180 ALHNQI 185
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 46.8 bits (106), Expect = 9e-06
Identities = 22/62 (35%), Positives = 38/62 (61%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 314
L V +L + T +++ +F + G V D+Y+ RD Y R+SRG FV++ + A A+D +
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEY-RQSRGCGFVKYSSKETAMAAIDGL 271
Query: 315 DG 320
+G
Sbjct: 272 NG 273
Score = 39.5 bits (88), Expect = 0.001
Identities = 18/66 (27%), Positives = 38/66 (57%)
Frame = +3
Query: 129 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 308
V L V ++ T E++R FE+ G V ++ + +D+ T + +G FV++ +DA+ A+
Sbjct: 120 VKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIR 179
Query: 309 TMDGRM 326
+ ++
Sbjct: 180 ALHNQI 185
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 46.4 bits (105), Expect = 1e-05
Identities = 23/70 (32%), Positives = 42/70 (60%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V +L + EDL++VF GEV ++ I ++ T++S+G AF+RF A+ A+ +
Sbjct: 218 VGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKELKS 277
Query: 321 RMLDGRELRV 350
M++G++ V
Sbjct: 278 PMINGKKCGV 287
Score = 30.7 bits (66), Expect = 0.62
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3
Query: 132 SLKVDNLTYRTTPEDLRRVFERCG--EVGDIYIPRD-RYTRESRGFAFVRFFERRDAEEA 302
+L V N+ TPE LR + G + DI + D +RG+AF+ F R DA +A
Sbjct: 295 TLFVGNICKIWTPEALREKLKHYGVENMDDITLVEDSNNVNMNRGYAFLEFSSRSDAMDA 354
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 46.4 bits (105), Expect = 1e-05
Identities = 21/69 (30%), Positives = 42/69 (60%)
Frame = +3
Query: 132 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 311
+L V +++ +T E L + F + G+V + + D+ +GFA+V F + +AE+AL
Sbjct: 22 TLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLE 81
Query: 312 MDGRMLDGR 338
++ +++DGR
Sbjct: 82 LNAQLVDGR 90
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 46.4 bits (105), Expect = 1e-05
Identities = 28/89 (31%), Positives = 45/89 (50%)
Frame = +3
Query: 93 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVR 272
SY R P + V L + T +++RR FE+ GE+ + I D+ T +S+G+ FV
Sbjct: 5 SYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVT 64
Query: 273 FFERRDAEEALDTMDGRMLDGRELRVQMA 359
F E A A+ ++DGR+ +A
Sbjct: 65 FRESDSATRAV-ADPNPVIDGRKANCNIA 92
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 46.4 bits (105), Expect = 1e-05
Identities = 28/89 (31%), Positives = 45/89 (50%)
Frame = +3
Query: 93 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVR 272
SY R P + V L + T +++RR FE+ GE+ + I D+ T +S+G+ FV
Sbjct: 5 SYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVT 64
Query: 273 FFERRDAEEALDTMDGRMLDGRELRVQMA 359
F E A A+ ++DGR+ +A
Sbjct: 65 FRESDSATRAV-ADPNPVIDGRKANCNIA 92
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/88 (28%), Positives = 48/88 (54%)
Frame = +3
Query: 87 KMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAF 266
K S G P +DG + + NL + TT D+R++F C + + + +++ T E +G+A
Sbjct: 248 KTSSGFAPEMVDGYNRVYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAH 306
Query: 267 VRFFERRDAEEALDTMDGRMLDGRELRV 350
V F + AL +D +++ GR +++
Sbjct: 307 VDFKDSVSVAIAL-KLDQQVICGRPVKI 333
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/76 (32%), Positives = 41/76 (53%)
Frame = +3
Query: 132 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 311
++ V N+ T E+LR+ F +CG + + D + S+GF FV F +A +A+ T
Sbjct: 305 NIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGK-SKGFGFVCFSTPEEAIDAVKT 363
Query: 312 MDGRMLDGRELRVQMA 359
G+M G+ L V +A
Sbjct: 364 FHGQMFHGKPLYVAIA 379
Score = 37.5 bits (83), Expect = 0.005
Identities = 24/76 (31%), Positives = 37/76 (48%)
Frame = +3
Query: 132 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 311
+L + NL + + LR F G++ + I +D R RG+AFV F DA A +T
Sbjct: 202 NLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDE-NRLCRGYAFVNFDNPEDARRAAET 260
Query: 312 MDGRMLDGRELRVQMA 359
++G + L V A
Sbjct: 261 VNGTKFGSKCLYVGRA 276
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 46.0 bits (104), Expect = 2e-05
Identities = 28/82 (34%), Positives = 43/82 (52%)
Frame = +3
Query: 114 RIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDA 293
+ DG+ +L V NL T E LR +F G + + RD + S+G FV F +A
Sbjct: 324 KFDGL-NLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEA 381
Query: 294 EEALDTMDGRMLDGRELRVQMA 359
L+ M+G+M+ G+ L V +A
Sbjct: 382 SRVLNEMNGKMVGGKPLYVALA 403
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 45.6 bits (103), Expect = 2e-05
Identities = 19/63 (30%), Positives = 40/63 (63%)
Frame = +3
Query: 171 EDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 350
EDLR + E GE+ ++ + +DR + +S+G+AFV F + A++A++ + + G+ +R
Sbjct: 130 EDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRC 189
Query: 351 QMA 359
++
Sbjct: 190 SLS 192
Score = 41.1 bits (92), Expect = 4e-04
Identities = 25/76 (32%), Positives = 41/76 (53%)
Frame = +3
Query: 132 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 311
+L V N+ T+ E L+ +F+R GEV I P + + R F FV + ER A +A+
Sbjct: 293 ALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGK--RDFGFVHYAERSSALKAVKD 350
Query: 312 MDGRMLDGRELRVQMA 359
+ ++G+ L V +A
Sbjct: 351 TERYEVNGQPLEVVLA 366
Score = 29.1 bits (62), Expect = 1.9
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGE-VGDIYIPRD-RYTRESRGFAFVRFFERRDAEEALD 308
L + N+ T ++ R+V E G V +I + +D T +RGFAFV ++ A+ +
Sbjct: 198 LFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQ 257
Query: 309 TM 314
M
Sbjct: 258 KM 259
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 45.6 bits (103), Expect = 2e-05
Identities = 24/73 (32%), Positives = 38/73 (52%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V +L+ T L + F D + D+ T SRGF FV F ++DA+ A++ M+G
Sbjct: 148 VGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNG 207
Query: 321 RMLDGRELRVQMA 359
+ L R++R A
Sbjct: 208 KWLSSRQIRCNWA 220
Score = 38.7 bits (86), Expect = 0.002
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Frame = +3
Query: 99 GRPPPRIDGMV--SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVR 272
G PP D S+ V N+ + T L+ +F G V + R ++ + FV
Sbjct: 47 GNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIR----KDKSSYGFVH 102
Query: 273 FFERRDAEEALDTMDGRMLDGRELRVQMA 359
+F+RR A A+ +++GR L G+ ++V A
Sbjct: 103 YFDRRSAALAILSLNGRHLFGQPIKVNWA 131
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 45.2 bits (102), Expect = 3e-05
Identities = 29/74 (39%), Positives = 40/74 (54%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 314
L V NL T ED+R +F GEV I D+ R S G A V + R DA +AL
Sbjct: 95 LHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPS-GTAEVVYPRRSDAFQALKKY 153
Query: 315 DGRMLDGRELRVQM 356
+ +LDGR +R+++
Sbjct: 154 NNVLLDGRPMRLEI 167
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 45.2 bits (102), Expect = 3e-05
Identities = 23/77 (29%), Positives = 40/77 (51%)
Frame = +3
Query: 120 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEE 299
D +L V L++ TT + LR V + G + ++ + R T SRG+ FV + ++
Sbjct: 61 DPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLR 120
Query: 300 ALDTMDGRMLDGRELRV 350
A + ++DGRE+ V
Sbjct: 121 AYEDAHHSLIDGREIIV 137
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 45.2 bits (102), Expect = 3e-05
Identities = 25/75 (33%), Positives = 40/75 (53%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 314
L V NL + + D+ +F +CG V ++ I R + ++RGFAFV +A+ A+D
Sbjct: 97 LFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQK-DGKNRGFAFVTMASGEEAQAAIDKF 155
Query: 315 DGRMLDGRELRVQMA 359
D + GR + V A
Sbjct: 156 DTFQVSGRIISVSFA 170
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 45.2 bits (102), Expect = 3e-05
Identities = 28/73 (38%), Positives = 41/73 (56%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V L + TT E L VFE GE+ + + D+ T +++GF FV F R+ A+EAL
Sbjct: 108 VYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKK 167
Query: 321 RMLDGRELRVQMA 359
R+L+ R Q+A
Sbjct: 168 RILN-RTATCQLA 179
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 45.2 bits (102), Expect = 3e-05
Identities = 28/73 (38%), Positives = 41/73 (56%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V L + TT E L VFE GE+ + + D+ T +++GF FV F R+ A+EAL
Sbjct: 108 VYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKK 167
Query: 321 RMLDGRELRVQMA 359
R+L+ R Q+A
Sbjct: 168 RILN-RTATCQLA 179
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 44.8 bits (101), Expect = 4e-05
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +3
Query: 96 YGRPPPRIDGMVS-LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVR 272
YGR P G+ + + V L + +DLR F R G + D YIP+D RGF FV
Sbjct: 228 YGRGEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVT 287
Query: 273 FFERRDAE 296
F E A+
Sbjct: 288 FAENGVAD 295
Score = 42.7 bits (96), Expect = 1e-04
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +3
Query: 174 DLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL-DTMD 317
D R FER GE+ D+Y+P+D +++ RG F+ F E+ + DT D
Sbjct: 106 DFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDTHD 154
Score = 36.7 bits (81), Expect = 0.009
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = +3
Query: 171 EDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 350
+ L+ + G++ D + +DR T SRGF +V F DA+ AL L R L V
Sbjct: 17 DGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL--KGEHFLGNRILEV 74
Query: 351 QMA 359
++A
Sbjct: 75 KVA 77
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 44.8 bits (101), Expect = 4e-05
Identities = 24/73 (32%), Positives = 38/73 (52%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V NL TT +DL+ F G++ + +D + S+GF FV F DA A+++++G
Sbjct: 33 VKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGK-SKGFGFVNFENADDAARAVESLNG 91
Query: 321 RMLDGRELRVQMA 359
D +E V A
Sbjct: 92 HKFDDKEWYVGRA 104
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/76 (31%), Positives = 38/76 (50%)
Frame = +3
Query: 132 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 311
+L V NL + E L+ +F G V + RD S+G FV F +A EA+
Sbjct: 133 NLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAFATPEEATEAMSQ 191
Query: 312 MDGRMLDGRELRVQMA 359
+ G+M++ + L V +A
Sbjct: 192 LSGKMIESKPLYVAIA 207
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 44.8 bits (101), Expect = 4e-05
Identities = 25/67 (37%), Positives = 36/67 (53%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 314
L V L+ TT E L+ F G++ D + DR + S+GF FV + DAE+A M
Sbjct: 36 LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEM 95
Query: 315 DGRMLDG 335
+ + LDG
Sbjct: 96 NAKFLDG 102
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 44.4 bits (100), Expect = 5e-05
Identities = 25/75 (33%), Positives = 40/75 (53%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 314
L + +++ T E LR F G+V + I RDR T +RGF F+ F + +E + M
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI--M 65
Query: 315 DGRMLDGRELRVQMA 359
D ++DGR + + A
Sbjct: 66 DKHIIDGRTVEAKKA 80
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 44.4 bits (100), Expect = 5e-05
Identities = 25/75 (33%), Positives = 40/75 (53%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 314
L + +++ T E LR F G+V + I RDR T +RGF F+ F + +E + M
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI--M 65
Query: 315 DGRMLDGRELRVQMA 359
D ++DGR + + A
Sbjct: 66 DKHIIDGRTVEAKKA 80
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 44.4 bits (100), Expect = 5e-05
Identities = 25/75 (33%), Positives = 40/75 (53%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 314
L + +++ T E LR F G+V + I RDR T +RGF F+ F + +E + M
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI--M 65
Query: 315 DGRMLDGRELRVQMA 359
D ++DGR + + A
Sbjct: 66 DKHIIDGRTVEAKKA 80
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 44.4 bits (100), Expect = 5e-05
Identities = 24/75 (32%), Positives = 41/75 (54%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 314
L + +++ T E L+ F + G++ + I RDR T +RGF F+ F + AE + M
Sbjct: 17 LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI--M 74
Query: 315 DGRMLDGRELRVQMA 359
D ++DGR + + A
Sbjct: 75 DKHIIDGRTVEAKKA 89
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 44.4 bits (100), Expect = 5e-05
Identities = 21/73 (28%), Positives = 39/73 (53%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V L + + E L +F + G V ++Y+P+DR T + + F+ + DA+ A+ ++
Sbjct: 29 VGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVLNM 88
Query: 321 RMLDGRELRVQMA 359
L G+ +RV A
Sbjct: 89 IKLHGKPIRVNKA 101
Score = 34.3 bits (75), Expect = 0.050
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 222 IPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 359
I RD T SRGF F+ + ++ A+++M G+ L R++ V A
Sbjct: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYA 189
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 44.4 bits (100), Expect = 5e-05
Identities = 26/73 (35%), Positives = 39/73 (53%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V NL T DL+R+F GE+ + +D + SR F FV F + A A++ M+G
Sbjct: 123 VKNLVETATDADLKRLFGEFGEITSAVVMKDGEGK-SRRFGFVNFEKAEAAVTAIEKMNG 181
Query: 321 RMLDGRELRVQMA 359
++D +EL V A
Sbjct: 182 VVVDEKELHVGRA 194
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 249 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 359
S+G FV F +A +A+ M+G+M+ + + V +A
Sbjct: 262 SKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLA 298
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 44.0 bits (99), Expect = 6e-05
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 314
L V NL + + LR++FE G V + +P D T + +GF F++F + ++ A +
Sbjct: 267 LYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIAL 326
Query: 315 DGRM-LDGRELRV 350
+G++ + GR ++V
Sbjct: 327 NGKLEIAGRTIKV 339
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 44.0 bits (99), Expect = 6e-05
Identities = 22/66 (33%), Positives = 33/66 (50%)
Frame = +3
Query: 162 TTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRE 341
T EDL +F R G V + RD T +S +AF+ F + E+A MD ++D R
Sbjct: 254 TEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKMDNALIDDRR 313
Query: 342 LRVQMA 359
+ V +
Sbjct: 314 IHVDFS 319
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 43.6 bits (98), Expect = 8e-05
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +3
Query: 162 TTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRM 326
TT E+L+ FE GE+ + + D+ T +G+ FV F R+ A EAL + RM
Sbjct: 419 TTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRPEKRM 473
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 43.6 bits (98), Expect = 8e-05
Identities = 27/83 (32%), Positives = 43/83 (51%)
Frame = +3
Query: 111 PRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRD 290
P + SL + NL + LR +F+ GEV + R T R FV FF+ RD
Sbjct: 177 PEGNNQGSLVIMNLEPTVSSSTLRHIFQVYGEVKQV-----RETPCKREQRFVEFFDVRD 231
Query: 291 AEEALDTMDGRMLDGRELRVQMA 359
A +AL M+G+++ G+ + +Q +
Sbjct: 232 AAKALRVMNGKVISGKPMVIQFS 254
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 43.6 bits (98), Expect = 8e-05
Identities = 26/89 (29%), Positives = 45/89 (50%)
Frame = +3
Query: 93 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVR 272
SY R P + V L + T +++RR F++ GE+ + I D+ T +S+G+ FV
Sbjct: 5 SYYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVT 64
Query: 273 FFERRDAEEALDTMDGRMLDGRELRVQMA 359
F + A A+ ++DGR+ +A
Sbjct: 65 FRDSDSATRAV-ADPNPVIDGRKANCNIA 92
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 43.2 bits (97), Expect = 1e-04
Identities = 22/70 (31%), Positives = 34/70 (48%)
Frame = +3
Query: 120 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEE 299
D + +L V +L + L F GEV + + R++ T +S G+ FV F R AEE
Sbjct: 105 DDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEE 164
Query: 300 ALDTMDGRML 329
L G ++
Sbjct: 165 VLQNYSGSVM 174
Score = 40.7 bits (91), Expect = 6e-04
Identities = 24/87 (27%), Positives = 44/87 (50%)
Frame = +3
Query: 90 MSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFV 269
M YG ++ V + EDLR+ F + GEV + IP +G FV
Sbjct: 308 MGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIP------VGKGCGFV 361
Query: 270 RFFERRDAEEALDTMDGRMLDGRELRV 350
+F +R+ AE+A+++++G ++ +R+
Sbjct: 362 QFADRKSAEDAIESLNGTVIGKNTVRL 388
Score = 37.1 bits (82), Expect = 0.007
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +3
Query: 129 VSLKVDNLTYRTTPEDLRRVF-ERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL 305
+S+ V +L+ T L F +R V + D T S+G+ FVRF + + AL
Sbjct: 202 LSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRAL 261
Query: 306 DTMDGRMLDGRELRVQMA 359
M+G R++RV +A
Sbjct: 262 TEMNGAYCSNRQMRVGIA 279
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 43.2 bits (97), Expect = 1e-04
Identities = 23/79 (29%), Positives = 44/79 (55%)
Frame = +3
Query: 123 GMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEA 302
G +L NL+Y+ D+ F+ GEV D+ + +G+ + F +A++A
Sbjct: 382 GSKTLFAGNLSYQIARSDIENFFKEAGEVVDVRL-SSFDDGSFKGYGHIEFASPEEAQKA 440
Query: 303 LDTMDGRMLDGRELRVQMA 359
L+ M+G++L GR++R+ +A
Sbjct: 441 LE-MNGKLLLGRDVRLDLA 458
Score = 42.7 bits (96), Expect = 1e-04
Identities = 23/61 (37%), Positives = 35/61 (57%)
Frame = +3
Query: 171 EDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 350
++LR F +CGEV +++P DR T SRGFA++ D EAL + G + G + V
Sbjct: 497 KELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLTSGFD--EALQ-LSGSEIGGGNIHV 553
Query: 351 Q 353
+
Sbjct: 554 E 554
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 43.2 bits (97), Expect = 1e-04
Identities = 25/73 (34%), Positives = 39/73 (53%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V NL T + L +F + G V + + RD R SRGF FV F +A++A++++ G
Sbjct: 206 VKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGR-SRGFGFVNFCNPENAKKAMESLCG 264
Query: 321 RMLDGRELRVQMA 359
L ++L V A
Sbjct: 265 LQLGSKKLFVGKA 277
Score = 35.1 bits (77), Expect = 0.029
Identities = 23/76 (30%), Positives = 36/76 (47%)
Frame = +3
Query: 123 GMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEA 302
G +L V NL T L R+F G + + + +S+GF FV+F + A A
Sbjct: 110 GFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEEN--GQSKGFGFVQFDTEQSAVSA 167
Query: 303 LDTMDGRMLDGRELRV 350
+ G M+ G++L V
Sbjct: 168 RSALHGSMVYGKKLFV 183
Score = 33.5 bits (73), Expect = 0.088
Identities = 21/76 (27%), Positives = 40/76 (52%)
Frame = +3
Query: 132 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 311
+L V NL+ LR +F G++ + R S+GF FV F ++++A
Sbjct: 305 NLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGR-SKGFGFVCFSNCEESKQAKRY 363
Query: 312 MDGRMLDGRELRVQMA 359
++G ++DG+ + V++A
Sbjct: 364 LNGFLVDGKPIVVRVA 379
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 43.2 bits (97), Expect = 1e-04
Identities = 23/62 (37%), Positives = 34/62 (54%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V L + TT E+L+ FE GE+ + + D+ T ++GF FV F R+ A AL +
Sbjct: 167 VRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPEK 226
Query: 321 RM 326
RM
Sbjct: 227 RM 228
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 43.2 bits (97), Expect = 1e-04
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPR---DRYTRESRGFAFVRFFERRDAEEALDT 311
V N+ Y T E LR + CGEVG + R DR T + +G+ F + + A A
Sbjct: 13 VGNIPYDATEEQLREI---CGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRN 69
Query: 312 MDGRMLDGRELRVQMA 359
+ ++GR+LRV A
Sbjct: 70 LQSYEINGRQLRVDFA 85
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 43.2 bits (97), Expect = 1e-04
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V +L+ T L F D + D+ T SRGF FV F ++DA+ A++ M+G
Sbjct: 152 VGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNG 211
Query: 321 RMLDGRELRVQMA 359
+ + R++R A
Sbjct: 212 KWVSSRQIRCNWA 224
Score = 37.1 bits (82), Expect = 0.007
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Frame = +3
Query: 99 GRPPPRIDGMV--SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVR 272
G PP D S+ N+ + T L+ +F G + + R ++ + FV
Sbjct: 51 GNLPPGFDPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIR----KDKSSYGFVH 106
Query: 273 FFERRDAEEALDTMDGRMLDGRELRVQMA 359
+F+RR A A+ T++GR + G+ ++V A
Sbjct: 107 YFDRRCASMAIMTLNGRHIFGQPMKVNWA 135
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 43.2 bits (97), Expect = 1e-04
Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Frame = +3
Query: 93 SYGRPPPR--IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAF 266
S GRP P+ ++G + L V + T ED+ F GE+ ++ + DR + +G+A
Sbjct: 82 SDGRPGPQRSVEGWIIL-VSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYAL 140
Query: 267 VRFFERRDAEEALDTMDGRMLDGRELRVQMA 359
+ + ++ +A+ A+ M+G L + + V A
Sbjct: 141 IEYEKKEEAQSAISAMNGAELLTQNVSVDWA 171
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 43.2 bits (97), Expect = 1e-04
Identities = 24/67 (35%), Positives = 35/67 (52%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V NL+ + E+L +VF G I RD + S+GF FV F DA A+D ++G
Sbjct: 228 VKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGK-SKGFGFVNFENSDDAARAVDALNG 286
Query: 321 RMLDGRE 341
+ D +E
Sbjct: 287 KTFDDKE 293
Score = 37.5 bits (83), Expect = 0.005
Identities = 25/76 (32%), Positives = 37/76 (48%)
Frame = +3
Query: 132 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 311
+L V NL T + LR F G + + RD + SRG FV F +A A+
Sbjct: 328 NLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAITE 386
Query: 312 MDGRMLDGRELRVQMA 359
M+G+M+ + L V +A
Sbjct: 387 MNGKMIVTKPLYVALA 402
Score = 33.5 bits (73), Expect = 0.088
Identities = 24/101 (23%), Positives = 48/101 (47%)
Frame = +3
Query: 48 LNSFDLS*ISILFKMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIP 227
LN L+ +I S P R G+ ++ + NL + L F G + +
Sbjct: 106 LNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVA 165
Query: 228 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 350
D + +S+G+ FV++ A+ A+D ++G +L+ +++ V
Sbjct: 166 VDP-SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 43.2 bits (97), Expect = 1e-04
Identities = 25/70 (35%), Positives = 37/70 (52%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 314
L V +++ TT E F + GEV D I DR T RGF FV F + AE+ L+
Sbjct: 68 LFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLE-- 125
Query: 315 DGRMLDGREL 344
+ ++D R++
Sbjct: 126 EDHVIDDRKV 135
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/62 (29%), Positives = 36/62 (58%)
Frame = +3
Query: 171 EDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 350
++L+ F G++ + I D +T SRGF FV F+ D+ + L + DG++ + + +V
Sbjct: 171 DELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVT-FQTEDSVDRLFS-DGKVHELGDKQV 228
Query: 351 QM 356
++
Sbjct: 229 EI 230
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 42.7 bits (96), Expect = 1e-04
Identities = 24/86 (27%), Positives = 44/86 (51%)
Frame = +3
Query: 102 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 281
+PP + +L + L + L +F GE+ + +DR T S+G+ FV++ +
Sbjct: 471 KPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYAD 530
Query: 282 RRDAEEALDTMDGRMLDGRELRVQMA 359
+ A A+ M+G +GR L V++A
Sbjct: 531 VQMANTAVQAMNGYRFEGRTLAVRIA 556
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 42.7 bits (96), Expect = 1e-04
Identities = 24/86 (27%), Positives = 44/86 (51%)
Frame = +3
Query: 102 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 281
+PP + +L + L + L +F GE+ + +DR T S+G+ FV++ +
Sbjct: 471 KPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYAD 530
Query: 282 RRDAEEALDTMDGRMLDGRELRVQMA 359
+ A A+ M+G +GR L V++A
Sbjct: 531 VQMANTAVQAMNGYRFEGRTLAVRIA 556
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 42.3 bits (95), Expect = 2e-04
Identities = 26/86 (30%), Positives = 43/86 (50%)
Frame = +3
Query: 99 GRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFF 278
GR I+ L + NL Y ED++ +F GE+ + DR R S+G A V +
Sbjct: 76 GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGR-SKGTAEVVYS 134
Query: 279 ERRDAEEALDTMDGRMLDGRELRVQM 356
R DA A+ + LDG+ +++++
Sbjct: 135 RRGDALAAVKKYNDVQLDGKPMKIEI 160
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 42.3 bits (95), Expect = 2e-04
Identities = 26/86 (30%), Positives = 43/86 (50%)
Frame = +3
Query: 99 GRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFF 278
GR I+ L + NL Y ED++ +F GE+ + DR R S+G A V +
Sbjct: 12 GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGR-SKGTAEVVYS 70
Query: 279 ERRDAEEALDTMDGRMLDGRELRVQM 356
R DA A+ + LDG+ +++++
Sbjct: 71 RRGDALAAVKKYNDVQLDGKPMKIEI 96
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 42.3 bits (95), Expect = 2e-04
Identities = 26/86 (30%), Positives = 43/86 (50%)
Frame = +3
Query: 99 GRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFF 278
GR I+ L + NL Y ED++ +F GE+ + DR R S+G A V +
Sbjct: 78 GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGR-SKGTAEVVYS 136
Query: 279 ERRDAEEALDTMDGRMLDGRELRVQM 356
R DA A+ + LDG+ +++++
Sbjct: 137 RRGDALAAVKKYNDVQLDGKPMKIEI 162
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 41.9 bits (94), Expect = 3e-04
Identities = 20/65 (30%), Positives = 38/65 (58%)
Frame = +3
Query: 132 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 311
SL V + + L++VF G+V ++ I + TR+S G+ +V F + DA+ A++
Sbjct: 59 SLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEA 118
Query: 312 MDGRM 326
M+G++
Sbjct: 119 MNGKV 123
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 41.9 bits (94), Expect = 3e-04
Identities = 24/73 (32%), Positives = 36/73 (49%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V +L+ T L F D + D+ T SRGF FV F ++DA+ A+D + G
Sbjct: 143 VGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITG 202
Query: 321 RMLDGRELRVQMA 359
+ L R++R A
Sbjct: 203 KWLGSRQIRCNWA 215
Score = 40.3 bits (90), Expect = 8e-04
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Frame = +3
Query: 99 GRPPPRIDGMV--SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVR 272
G PP D S+ V N+ + T L+ VF G V + R +E + FV
Sbjct: 42 GNLPPGFDPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIR----KEKSSYGFVH 97
Query: 273 FFERRDAEEALDTMDGRMLDGRELRVQMA 359
+F+RR A A+ +++GR L G+ ++V A
Sbjct: 98 YFDRRSAGLAILSLNGRHLFGQPIKVNWA 126
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 41.5 bits (93), Expect = 3e-04
Identities = 23/75 (30%), Positives = 41/75 (54%)
Frame = +3
Query: 132 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 311
+L + N+ ++L F+ G V + D+ T S+ F FV + + A+ A+D
Sbjct: 350 NLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDM 409
Query: 312 MDGRMLDGRELRVQM 356
M+GR L G++L+VQ+
Sbjct: 410 MNGRHLGGKKLKVQL 424
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 41.5 bits (93), Expect = 3e-04
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +3
Query: 120 DGMVS-LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAE 296
DG ++ L V ++ T D+R+VFE+ G V +I +P+D+ T E + F+++ + +
Sbjct: 106 DGSIAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEEGN 165
Query: 297 EAL 305
A+
Sbjct: 166 AAI 168
Score = 37.1 bits (82), Expect = 0.007
Identities = 24/74 (32%), Positives = 38/74 (51%)
Frame = +3
Query: 99 GRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFF 278
G P ++ L V L +TT ++ VF R G + DIY+ D + RG+AFV+F
Sbjct: 197 GFAPVQLPDNPKLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDM-KICRGYAFVQFS 255
Query: 279 ERRDAEEALDTMDG 320
+ A A+ ++G
Sbjct: 256 CKEMALAAIKALNG 269
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 41.1 bits (92), Expect = 4e-04
Identities = 27/74 (36%), Positives = 40/74 (54%)
Frame = +3
Query: 132 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 311
SL + NL + + E L +F G+V + +D + ESRGFAF+ F A A+
Sbjct: 18 SLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKD-FRGESRGFAFIEFESADSAGRAMLH 76
Query: 312 MDGRMLDGRELRVQ 353
MDGR++ + L VQ
Sbjct: 77 MDGRLIGQKILCVQ 90
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 41.1 bits (92), Expect = 4e-04
Identities = 25/80 (31%), Positives = 42/80 (52%)
Frame = +3
Query: 117 IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAE 296
I+ L + NL Y + ED++ +F G++ I DR R S+G A V F R DA
Sbjct: 104 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGR-SKGTAEVVFSRRGDAL 162
Query: 297 EALDTMDGRMLDGRELRVQM 356
A+ + LDG+ +++++
Sbjct: 163 AAVKRYNNVQLDGKLMKIEI 182
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 41.1 bits (92), Expect = 4e-04
Identities = 25/73 (34%), Positives = 35/73 (47%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V L+ T E L+ F G++ D + DR + SRGF FV + A A+ M
Sbjct: 40 VGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAMQN 99
Query: 321 RMLDGRELRVQMA 359
+ LDGR + V A
Sbjct: 100 KELDGRIIGVHPA 112
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 41.1 bits (92), Expect = 4e-04
Identities = 25/73 (34%), Positives = 37/73 (50%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V NL ++ +F + G V I + + G+AFV F + RDAE+A+ DG
Sbjct: 11 VGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHGRDG 67
Query: 321 RMLDGRELRVQMA 359
DG LRV++A
Sbjct: 68 YDFDGHRLRVELA 80
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 41.1 bits (92), Expect = 4e-04
Identities = 25/73 (34%), Positives = 37/73 (50%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V NL ++ +F + G V I + + G+AFV F + RDAE+A+ DG
Sbjct: 11 VGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHGRDG 67
Query: 321 RMLDGRELRVQMA 359
DG LRV++A
Sbjct: 68 YDFDGHRLRVELA 80
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 41.1 bits (92), Expect = 4e-04
Identities = 25/73 (34%), Positives = 37/73 (50%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V NL ++ +F + G V I + + G+AFV F + RDAE+A+ DG
Sbjct: 11 VGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHGRDG 67
Query: 321 RMLDGRELRVQMA 359
DG LRV++A
Sbjct: 68 YDFDGHRLRVELA 80
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 40.7 bits (91), Expect = 6e-04
Identities = 25/76 (32%), Positives = 38/76 (50%)
Frame = +3
Query: 132 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 311
S+ V NL ++ +F + G + DI + + + FV F RDAE+A+
Sbjct: 8 SIYVGNLPGDIREHEIEDIFYKYGRIVDIEL---KVPPRPPCYCFVEFEHSRDAEDAIKG 64
Query: 312 MDGRMLDGRELRVQMA 359
DG LDG LRV++A
Sbjct: 65 RDGYNLDGCRLRVELA 80
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 40.7 bits (91), Expect = 6e-04
Identities = 22/73 (30%), Positives = 35/73 (47%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V L+ TT E+ + FER G D+ + D T RGF FV ++ D+ E + +
Sbjct: 124 VGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVT-YDSEDSVEVVMQSNF 182
Query: 321 RMLDGRELRVQMA 359
L + + V+ A
Sbjct: 183 HELSDKRVEVKRA 195
Score = 39.5 bits (88), Expect = 0.001
Identities = 24/75 (32%), Positives = 39/75 (52%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 314
L V + T+ E L++ F R G V + + +++ T + RGF FVRF D +AL
Sbjct: 8 LFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKAL--R 65
Query: 315 DGRMLDGRELRVQMA 359
D + G+ + V+ A
Sbjct: 66 DTHFILGKPVDVRKA 80
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 40.7 bits (91), Expect = 6e-04
Identities = 18/49 (36%), Positives = 30/49 (61%)
Frame = +3
Query: 213 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 359
D + D+ T SRGF FV F ++DA+ A++ M+G+ + R++R A
Sbjct: 180 DARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWA 228
Score = 37.1 bits (82), Expect = 0.007
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Frame = +3
Query: 99 GRPPPRIDGMV--SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVR 272
G PP D S+ N+ + T L+ +F G + + R ++ + FV
Sbjct: 51 GNLPPGFDPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIR----KDKSSYGFVH 106
Query: 273 FFERRDAEEALDTMDGRMLDGRELRVQMA 359
+F+RR A A+ T++GR + G+ ++V A
Sbjct: 107 YFDRRCASMAIMTLNGRHIFGQPMKVNWA 135
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 40.7 bits (91), Expect = 6e-04
Identities = 23/70 (32%), Positives = 38/70 (54%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V L T EDL++ F GE+ + IP +G FV+F R +AEEAL+ ++G
Sbjct: 310 VGGLDSSVTDEDLKQPFSEFGEIVSVKIP------VGKGCGFVQFVNRPNAEEALEKLNG 363
Query: 321 RMLDGRELRV 350
++ + +R+
Sbjct: 364 TVIGKQTVRL 373
Score = 31.1 bits (67), Expect = 0.47
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 231 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 350
D T S+G+ FVRF + + +A+ M+G R +R+
Sbjct: 234 DANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 273
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 40.7 bits (91), Expect = 6e-04
Identities = 23/70 (32%), Positives = 38/70 (54%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V L T EDL++ F GE+ + IP +G FV+F R +AEEAL+ ++G
Sbjct: 308 VGGLDSSVTDEDLKQPFNEFGEIVSVKIP------VGKGCGFVQFVNRPNAEEALEKLNG 361
Query: 321 RMLDGRELRV 350
++ + +R+
Sbjct: 362 TVIGKQTVRL 371
Score = 31.9 bits (69), Expect = 0.27
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +3
Query: 129 VSLKVDNLTYRTTPEDLRRVF-ERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL 305
+S+ V +L+ + L F E+ V + D T S+G+ FVRF + + +A+
Sbjct: 197 LSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
Query: 306 DTMDGRMLDGRELRV 350
M+G R +R+
Sbjct: 257 TEMNGVKCSSRAMRI 271
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 40.7 bits (91), Expect = 6e-04
Identities = 21/75 (28%), Positives = 42/75 (56%)
Frame = +3
Query: 132 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 311
+L + N+ ++L F+ G+V + D+ T S+ F F+ + + A+ A++T
Sbjct: 340 NLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINT 399
Query: 312 MDGRMLDGRELRVQM 356
M+G L G++L+VQ+
Sbjct: 400 MNGCQLSGKKLKVQL 414
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/63 (23%), Positives = 32/63 (50%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 314
L V L + +++ +F G + D+ I R + S+G F+++ + A A++ +
Sbjct: 111 LFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSL-QTSKGCLFLKYESKEQAVAAMEAL 169
Query: 315 DGR 323
+GR
Sbjct: 170 NGR 172
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 40.7 bits (91), Expect = 6e-04
Identities = 21/75 (28%), Positives = 42/75 (56%)
Frame = +3
Query: 132 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 311
+L + N+ ++L F+ G+V + D+ T S+ F F+ + + A+ A++T
Sbjct: 331 NLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINT 390
Query: 312 MDGRMLDGRELRVQM 356
M+G L G++L+VQ+
Sbjct: 391 MNGCQLSGKKLKVQL 405
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/63 (23%), Positives = 32/63 (50%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 314
L V L + +++ +F G + D+ I R + S+G F+++ + A A++ +
Sbjct: 102 LFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSL-QTSKGCLFLKYESKEQAVAAMEAL 160
Query: 315 DGR 323
+GR
Sbjct: 161 NGR 163
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 40.3 bits (90), Expect = 8e-04
Identities = 21/70 (30%), Positives = 41/70 (58%)
Frame = +3
Query: 150 LTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRML 329
L+ TT + LR++F + +D+ T+ +GF F+ F DA++AL ++G+++
Sbjct: 78 LSAYTTDQSLRQLFAPFAR-----LIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIV 132
Query: 330 DGRELRVQMA 359
+GR + V+ A
Sbjct: 133 NGRLIFVETA 142
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 40.3 bits (90), Expect = 8e-04
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL--- 305
L + +++ T+ + LR F GEV + I +DR T +RGF FV F + AE +
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK 67
Query: 306 DTMDGRMLDGRE 341
+DG++++ ++
Sbjct: 68 HIIDGKIVEAKK 79
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 40.3 bits (90), Expect = 8e-04
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL--- 305
L + +++ T+ + LR F GEV + I +DR T +RGF FV F + AE +
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK 67
Query: 306 DTMDGRMLDGRE 341
+DG++++ ++
Sbjct: 68 HIIDGKIVEAKK 79
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 40.3 bits (90), Expect = 8e-04
Identities = 24/59 (40%), Positives = 33/59 (55%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMD 317
V N Y T DL R+F++ G V DR +S G+AFV F + RDAE+A+ +D
Sbjct: 6 VGNFEYETRQSDLERLFDKYGRV-------DRVDMKS-GYAFVYFEDERDAEDAIRKLD 56
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 40.3 bits (90), Expect = 8e-04
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL--- 305
L + +++ T E L+ F GEV + I +DR T +RGF FV F + AE +
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEK 67
Query: 306 DTMDGRMLDGRE 341
+DGR+++ ++
Sbjct: 68 HNIDGRLVEAKK 79
Score = 35.1 bits (77), Expect = 0.029
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 308
V L T D + FE+ G D+ + D T+ RGF F+ + D+EEA++
Sbjct: 112 VGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITY----DSEEAVE 163
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 40.3 bits (90), Expect = 8e-04
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL--- 305
L + +++ T E L+ F GEV + I +DR T +RGF FV F + AE +
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEK 67
Query: 306 DTMDGRMLDGRE 341
+DGR+++ ++
Sbjct: 68 HNIDGRLVEAKK 79
Score = 35.1 bits (77), Expect = 0.029
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 308
V L T D + FE+ G D+ + D T+ RGF F+ + D+EEA++
Sbjct: 112 VGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITY----DSEEAVE 163
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 39.9 bits (89), Expect = 0.001
Identities = 26/80 (32%), Positives = 37/80 (46%)
Frame = +3
Query: 120 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEE 299
D + V L + T E L FER GE+ + D T+ S+GF FV F E A
Sbjct: 6 DRETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATR 65
Query: 300 ALDTMDGRMLDGRELRVQMA 359
A + +DGR + ++A
Sbjct: 66 ACEN-PNHTIDGRTVNCKLA 84
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/75 (28%), Positives = 35/75 (46%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 314
L + L+ T L+ F V + + ++ T SRG+ FV F A A+ M
Sbjct: 33 LYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAM 92
Query: 315 DGRMLDGRELRVQMA 359
+G+ L+G + V +A
Sbjct: 93 NGQELNGFNISVNVA 107
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/79 (25%), Positives = 40/79 (50%)
Frame = +3
Query: 117 IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAE 296
+D + V L TT + + F + GE+ D I +DR T + RGF FV + + +
Sbjct: 38 VDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVD 97
Query: 297 EALDTMDGRMLDGRELRVQ 353
+ + D ++ G+++ ++
Sbjct: 98 KVI--QDNHIIIGKQVEIK 114
Score = 32.7 bits (71), Expect = 0.15
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +3
Query: 171 EDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRM-LDGRELR 347
++ + F + GE+ + I RD T SRGF FV +E D + L R+ L G ++
Sbjct: 144 DEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVT-YESEDMVDHLLAKGNRIELSGTQVE 202
Query: 348 VQMA 359
++ A
Sbjct: 203 IKKA 206
>At1g66260.1 68414.m07522 RNA and export factor-binding protein,
putative similar to GI:7159943 from [Mus musculus] (RNA
6 (4), 638-650 (2000))
Length = 295
Score = 39.9 bits (89), Expect = 0.001
Identities = 23/72 (31%), Positives = 39/72 (54%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
+ NL T ED+R ++ GE+ I D+ R S G A V + R DA +A+ +
Sbjct: 111 ITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGRPS-GSAEVVYMRRSDAIQAMRKYNN 169
Query: 321 RMLDGRELRVQM 356
+LDGR +++++
Sbjct: 170 VLLDGRPMKLEI 181
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 39.5 bits (88), Expect = 0.001
Identities = 24/75 (32%), Positives = 36/75 (48%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 314
L V +++ T + LR F GEV + RD+ T RGF FV F + + L
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVL--Q 65
Query: 315 DGRMLDGRELRVQMA 359
+ +D RE+ V+ A
Sbjct: 66 EKHSIDTREVDVKRA 80
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 39.5 bits (88), Expect = 0.001
Identities = 24/76 (31%), Positives = 39/76 (51%)
Frame = +3
Query: 132 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 311
++ V NL ++ +F + G V I + + G+AFV F + RDA++A+
Sbjct: 8 TIYVGNLPGDIREREVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDADDAIYG 64
Query: 312 MDGRMLDGRELRVQMA 359
DG DG LRV++A
Sbjct: 65 RDGYDFDGHHLRVELA 80
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 39.5 bits (88), Expect = 0.001
Identities = 24/76 (31%), Positives = 39/76 (51%)
Frame = +3
Query: 132 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 311
++ V NL ++ +F + G V I + + G+AFV F + RDA++A+
Sbjct: 8 TIYVGNLPGDIREREVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDADDAIYG 64
Query: 312 MDGRMLDGRELRVQMA 359
DG DG LRV++A
Sbjct: 65 RDGYDFDGHHLRVELA 80
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 39.5 bits (88), Expect = 0.001
Identities = 18/64 (28%), Positives = 37/64 (57%)
Frame = +3
Query: 162 TTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRE 341
TT + F + GE+ D I RDR+T + RGF F+ F + ++ ++ D +++G++
Sbjct: 30 TTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE--DTHVINGKQ 87
Query: 342 LRVQ 353
+ ++
Sbjct: 88 VEIK 91
Score = 39.5 bits (88), Expect = 0.001
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM-- 314
V + T ++L+ F + G V + + RD T SRGF FV F D+EE +D +
Sbjct: 113 VGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIF----DSEEVVDELLS 168
Query: 315 DGRMLDGRELRVQM 356
G M+D + +V++
Sbjct: 169 KGNMIDMADTQVEI 182
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 39.5 bits (88), Expect = 0.001
Identities = 18/64 (28%), Positives = 37/64 (57%)
Frame = +3
Query: 162 TTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRE 341
TT + F + GE+ D I RDR+T + RGF F+ F + ++ ++ D +++G++
Sbjct: 30 TTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE--DTHVINGKQ 87
Query: 342 LRVQ 353
+ ++
Sbjct: 88 VEIK 91
Score = 39.1 bits (87), Expect = 0.002
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM-- 314
V + T ++L+ F + G V + + RD T SRGF FV F D+EE +D +
Sbjct: 113 VGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIF----DSEEVVDELLS 168
Query: 315 DGRMLDGRELRVQM 356
G M+D + +V +
Sbjct: 169 KGNMIDMADTQVSL 182
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 39.5 bits (88), Expect = 0.001
Identities = 23/73 (31%), Positives = 36/73 (49%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V L + T E LR+ FE+ GE+ + + D+ T S+G+ FV F + A A
Sbjct: 28 VGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRAC-ADPT 86
Query: 321 RMLDGRELRVQMA 359
++DGR +A
Sbjct: 87 PIIDGRRANCNLA 99
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/61 (31%), Positives = 35/61 (57%)
Frame = +3
Query: 165 TPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 344
T DL+ GEV ++ I R++ + + +G+AFV F + A EA+DT++ G+ +
Sbjct: 104 TEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRI 163
Query: 345 R 347
+
Sbjct: 164 K 164
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFE-RCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 311
+ V N+ Y E + F +CG V ++ + D TR +G AFV F + +A+
Sbjct: 446 IHVTNVYYAAKKEAISMFFSSKCGAVQNVIVVTDPVTRHPKGTAFVTFATKESVGKAV-A 504
Query: 312 MDGRMLDGRELRVQM 356
+ G M R ++V+M
Sbjct: 505 LSGTMFYSRPIKVRM 519
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 38.7 bits (86), Expect = 0.002
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V L + T E LRR F++ G++ + + D+ T S+G+ FV F + A A
Sbjct: 28 VGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRAC-VDPT 86
Query: 321 RMLDGRELRVQMA 359
++DGR +A
Sbjct: 87 PIIDGRRANCNLA 99
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 38.3 bits (85), Expect = 0.003
Identities = 22/91 (24%), Positives = 44/91 (48%)
Frame = +3
Query: 78 ILFKMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRG 257
I +S P R+ G ++ + NL + L F G + + D T S+G
Sbjct: 119 IRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKG 177
Query: 258 FAFVRFFERRDAEEALDTMDGRMLDGRELRV 350
+ FV+F + A+ A+D ++G +++ +++ V
Sbjct: 178 YGFVQFEKEESAQAAIDKLNGMLMNDKQVFV 208
Score = 34.7 bits (76), Expect = 0.038
Identities = 22/76 (28%), Positives = 36/76 (47%)
Frame = +3
Query: 132 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 311
+L + NL E L+ +F G V + + SRGF FV + +A AL
Sbjct: 333 NLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGM-SRGFGFVAYSNPEEALRALSE 391
Query: 312 MDGRMLDGRELRVQMA 359
M+G+M+ + L + +A
Sbjct: 392 MNGKMIGRKPLYIALA 407
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 37.9 bits (84), Expect = 0.004
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEA-LDTMD 317
V L + T E +++ FE+ GE+ + + D+ + S+G+ FV F E A A +D
Sbjct: 17 VGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATP 76
Query: 318 GRMLDGRELRVQMA 359
++DGR +A
Sbjct: 77 --VIDGRRANCNLA 88
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 37.9 bits (84), Expect = 0.004
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEA-LDTMD 317
V L + T E +++ FE+ GE+ + + D+ + S+G+ FV F E A A +D
Sbjct: 17 VGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATP 76
Query: 318 GRMLDGRELRVQMA 359
++DGR +A
Sbjct: 77 --VIDGRRANCNLA 88
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 37.9 bits (84), Expect = 0.004
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEA-LDTMD 317
V L + T E +++ FE+ GE+ + + D+ + S+G+ FV F E A A +D
Sbjct: 17 VGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATP 76
Query: 318 GRMLDGRELRVQMA 359
++DGR +A
Sbjct: 77 --VIDGRRANCNLA 88
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 37.5 bits (83), Expect = 0.005
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
+ N+ R + L + + G V D++IPRD+ T + +GFAF + A+ A+ G
Sbjct: 11 IGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYAVKLFSG 70
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 37.5 bits (83), Expect = 0.005
Identities = 23/91 (25%), Positives = 44/91 (48%)
Frame = +3
Query: 78 ILFKMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRG 257
I +S P R+ G ++ + NL + L F G + + D R S+G
Sbjct: 115 IRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGR-SKG 173
Query: 258 FAFVRFFERRDAEEALDTMDGRMLDGRELRV 350
+ FV+F + A+ A+D ++G +L+ +++ V
Sbjct: 174 YGFVQFEKEETAQAAIDKLNGMLLNDKQVFV 204
Score = 37.5 bits (83), Expect = 0.005
Identities = 18/68 (26%), Positives = 35/68 (51%)
Frame = +3
Query: 117 IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAE 296
+ ++ V NL T ++L++ F + G++ + +D+ + SR F FV F A
Sbjct: 221 VPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAA 279
Query: 297 EALDTMDG 320
A++ M+G
Sbjct: 280 VAVEKMNG 287
Score = 33.9 bits (74), Expect = 0.067
Identities = 22/76 (28%), Positives = 36/76 (47%)
Frame = +3
Query: 132 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 311
+L + NL E L+ +F G V + + SRGF FV + +A A+
Sbjct: 329 NLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGL-SRGFGFVAYSNPEEALLAMKE 387
Query: 312 MDGRMLDGRELRVQMA 359
M+G+M+ + L V +A
Sbjct: 388 MNGKMIGRKPLYVALA 403
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 37.5 bits (83), Expect = 0.005
Identities = 19/56 (33%), Positives = 32/56 (57%)
Frame = +3
Query: 186 VFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 353
+F+ G V + + R+ T ESRG +V A+ A+ ++DG + GRE+RV+
Sbjct: 127 MFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVR 182
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 37.1 bits (82), Expect = 0.007
Identities = 21/73 (28%), Positives = 39/73 (53%)
Frame = +3
Query: 132 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 311
+L V+NL + E+L +F GE+ ++ R T ++ FF+ R A+ AL
Sbjct: 296 ALWVNNLDSSISNEELHGIFSSYGEIREV-----RRTMHENSQVYIEFFDVRKAKVALQG 350
Query: 312 MDGRMLDGRELRV 350
++G + GR+L++
Sbjct: 351 LNGLEVAGRQLKL 363
Score = 32.7 bits (71), Expect = 0.15
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +3
Query: 246 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 353
++RGF V +++ R A++A + GR+L GR+L ++
Sbjct: 245 KNRGFIMVSYYDIRAAQKAARALHGRLLRGRKLDIR 280
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 37.1 bits (82), Expect = 0.007
Identities = 23/70 (32%), Positives = 35/70 (50%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V L T EDL + F GEV + IP +G FV+F R+ AEEA+ ++G
Sbjct: 331 VGGLDADVTEEDLMQPFSDFGEVVSVKIP------VGKGCGFVQFANRQSAEEAIGNLNG 384
Query: 321 RMLDGRELRV 350
++ +R+
Sbjct: 385 TVIGKNTVRL 394
Score = 35.1 bits (77), Expect = 0.029
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 231 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 359
D T S+G+ FVRF + + A+ M+G R++RV +A
Sbjct: 248 DSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIA 290
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 37.1 bits (82), Expect = 0.007
Identities = 20/73 (27%), Positives = 36/73 (49%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V L + T LR FE+ G++ + + D+ + S+G+ FV F + A++A
Sbjct: 11 VGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKAC-VDPA 69
Query: 321 RMLDGRELRVQMA 359
++DGR +A
Sbjct: 70 PVIDGRRANCNLA 82
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 37.1 bits (82), Expect = 0.007
Identities = 20/73 (27%), Positives = 36/73 (49%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V L + T LR FE+ G++ + + D+ + S+G+ FV F + A++A
Sbjct: 11 VGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKAC-VDPA 69
Query: 321 RMLDGRELRVQMA 359
++DGR +A
Sbjct: 70 PVIDGRRANCNLA 82
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 37.1 bits (82), Expect = 0.007
Identities = 24/76 (31%), Positives = 40/76 (52%)
Frame = +3
Query: 132 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 311
++ V NL ++ +F + G + DI + + G+AFV F + RDA++A+
Sbjct: 8 TIYVGNLPGDIRKCEVEDLFYKYGPIVDIDL---KIPPRPPGYAFVEFEDPRDADDAIYG 64
Query: 312 MDGRMLDGRELRVQMA 359
DG DG LRV++A
Sbjct: 65 RDGYDFDGCRLRVEIA 80
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 36.7 bits (81), Expect = 0.009
Identities = 24/68 (35%), Positives = 37/68 (54%)
Frame = +3
Query: 132 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 311
+L V +LT TT DL +F R G++ I + Y+ SRGFAF+ + +A A +
Sbjct: 19 NLWVGSLTPETTESDLTELFGRYGDIDRITV----YS--SRGFAFIYYRHVEEAVAAKEA 72
Query: 312 MDGRMLDG 335
+ G L+G
Sbjct: 73 LQGANLNG 80
Score = 33.5 bits (73), Expect = 0.088
Identities = 23/73 (31%), Positives = 38/73 (52%)
Frame = +3
Query: 132 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 311
SL V + + +DL F + G++ D R+R T AF+ ++E DA +A +
Sbjct: 251 SLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKT------AFIDYYEMDDALQA-KS 303
Query: 312 MDGRMLDGRELRV 350
M+G+ + G LRV
Sbjct: 304 MNGKPMGGSFLRV 316
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 36.7 bits (81), Expect = 0.009
Identities = 22/75 (29%), Positives = 36/75 (48%)
Frame = +3
Query: 135 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 314
L + +++ T LR F GEV + + R++ T RGF FV F + + L
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVL--Q 65
Query: 315 DGRMLDGRELRVQMA 359
D +D R++ V+ A
Sbjct: 66 DKHHIDNRDVDVKRA 80
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 36.7 bits (81), Expect = 0.009
Identities = 26/94 (27%), Positives = 44/94 (46%)
Frame = +3
Query: 72 ISILFKMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 251
+ I F + P + +L V NL + +DL +F GE+ +I R T
Sbjct: 234 LDIHFSIPKDNPSEKDMNQGTLVVFNLDPSISNDDLHGIFGAHGEIKEI-----RETPHK 288
Query: 252 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 353
R FV F++ R AE AL ++ + G+ ++V+
Sbjct: 289 RHHKFVEFYDVRGAEAALKALNRCEIAGKRIKVE 322
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 36.7 bits (81), Expect = 0.009
Identities = 26/94 (27%), Positives = 44/94 (46%)
Frame = +3
Query: 72 ISILFKMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 251
+ I F + P + +L V NL + +DL +F GE+ +I R T
Sbjct: 234 LDIHFSIPKDNPSEKDMNQGTLVVFNLDPSISNDDLHGIFGAHGEIKEI-----RETPHK 288
Query: 252 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 353
R FV F++ R AE AL ++ + G+ ++V+
Sbjct: 289 RHHKFVEFYDVRGAEAALKALNRCEIAGKRIKVE 322
>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
GB:AAC39463 from [Zea mays], PF00076 RNA recognition
motif (2 copies)
Length = 615
Score = 36.3 bits (80), Expect = 0.012
Identities = 20/76 (26%), Positives = 41/76 (53%)
Frame = +3
Query: 132 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 311
+L + NL + LR++F+ G + ++ R T + FV F++ RDA A D
Sbjct: 214 TLVIFNLDPEVSSITLRQIFQVYGPIKEL-----RETPYKKHQRFVEFYDVRDAARAFDR 268
Query: 312 MDGRMLDGRELRVQMA 359
M+G+ + G+++ ++ +
Sbjct: 269 MNGKEIGGKQVVIEFS 284
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 35.9 bits (79), Expect = 0.017
Identities = 21/54 (38%), Positives = 29/54 (53%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEA 302
V L + T E L F+R GE+ + + DR T S+G+ FV F +DAE A
Sbjct: 17 VGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTF---KDAESA 67
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 35.9 bits (79), Expect = 0.017
Identities = 21/66 (31%), Positives = 33/66 (50%)
Frame = +3
Query: 126 MVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL 305
M + V NL R T +L F G V +++ R G+AF+ F + RDA +A+
Sbjct: 1 MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWV-----ARRPPGYAFLDFEDPRDARDAI 55
Query: 306 DTMDGR 323
+DG+
Sbjct: 56 RALDGK 61
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 35.9 bits (79), Expect = 0.017
Identities = 21/80 (26%), Positives = 39/80 (48%)
Frame = +3
Query: 120 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEE 299
+G L V L + TT ++ V + G V +I +R + +S+G+ V F++ A
Sbjct: 199 NGNTMLFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAA 258
Query: 300 ALDTMDGRMLDGRELRVQMA 359
+ M+G + +G+ V A
Sbjct: 259 CKEGMNGFIFNGKACVVAFA 278
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 35.5 bits (78), Expect = 0.022
Identities = 20/62 (32%), Positives = 34/62 (54%)
Frame = +3
Query: 165 TPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 344
T +DL+ VF + GE+ + IP + FV++ R AE+AL ++G L G+ +
Sbjct: 290 TEDDLKSVFGQFGELVHVKIP------AGKRCGFVQYANRACAEQALSVLNGTQLGGQSI 343
Query: 345 RV 350
R+
Sbjct: 344 RL 345
Score = 33.1 bits (72), Expect = 0.12
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 222 IPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELR 347
+ DR T S+G+ FVRF + + A+ M+G+ R +R
Sbjct: 205 VVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMR 246
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 35.1 bits (77), Expect = 0.029
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +3
Query: 201 GEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 350
G V + DR T S+G+ FVRF + + A+ M+G+ R +R+
Sbjct: 179 GSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRI 228
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 35.1 bits (77), Expect = 0.029
Identities = 25/70 (35%), Positives = 36/70 (51%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V ++ T E L +F CG+V D I D ++ FAFV F + + A EAL ++ G
Sbjct: 145 VSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHS--VLRFAFVEFADDQGAHEAL-SLGG 201
Query: 321 RMLDGRELRV 350
ML +RV
Sbjct: 202 TMLGFYPVRV 211
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 35.1 bits (77), Expect = 0.029
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 252 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 359
R +AFV F + RDA++A +DGR DG + V+ +
Sbjct: 3 RDYAFVEFGDPRDADDARHYLDGRDFDGSRITVEFS 38
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 35.1 bits (77), Expect = 0.029
Identities = 20/66 (30%), Positives = 33/66 (50%)
Frame = +3
Query: 126 MVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL 305
M + V NL R T +L F G + +++ R G+AF+ F + RDA +A+
Sbjct: 1 MSRVYVGNLDPRVTERELEDEFRSFGVIRSVWV-----ARRPPGYAFLDFEDSRDARDAI 55
Query: 306 DTMDGR 323
+DG+
Sbjct: 56 REVDGK 61
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 34.7 bits (76), Expect = 0.038
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Frame = +3
Query: 147 NLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMD--- 317
N Y DL R+F + G+V +R ++ GFAFV + RDAE+A+ +D
Sbjct: 8 NFEYDARESDLERLFRKYGKV-------ERVDMKA-GFAFVYMEDERDAEDAIRALDRFE 59
Query: 318 -GRMLDGRELRVQ 353
GR GR LRV+
Sbjct: 60 YGR--TGRRLRVE 70
Score = 30.3 bits (65), Expect = 0.82
Identities = 20/66 (30%), Positives = 33/66 (50%)
Frame = +3
Query: 162 TTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRE 341
T DL R FE G++ ++ I R+ FAF+++ + DA ALD + L +
Sbjct: 108 TRTRDLERHFEPYGKIVNVRIRRN--------FAFIQYEAQEDATRALDATNSSKLMDKV 159
Query: 342 LRVQMA 359
+ V+ A
Sbjct: 160 ISVEYA 165
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 34.7 bits (76), Expect = 0.038
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Frame = +3
Query: 147 NLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMD--- 317
N Y DL R+F + G+V +R ++ GFAFV + RDAE+A+ +D
Sbjct: 8 NFEYDARESDLERLFRKYGKV-------ERVDMKA-GFAFVYMEDERDAEDAIRALDRFE 59
Query: 318 -GRMLDGRELRVQ 353
GR GR LRV+
Sbjct: 60 YGR--TGRRLRVE 70
Score = 30.3 bits (65), Expect = 0.82
Identities = 20/66 (30%), Positives = 33/66 (50%)
Frame = +3
Query: 162 TTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRE 341
T DL R FE G++ ++ I R+ FAF+++ + DA ALD + L +
Sbjct: 108 TRTRDLERHFEPYGKIVNVRIRRN--------FAFIQYEAQEDATRALDATNSSKLMDKV 159
Query: 342 LRVQMA 359
+ V+ A
Sbjct: 160 ISVEYA 165
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 34.3 bits (75), Expect = 0.050
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +3
Query: 252 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 353
R +AFV F + RDA++A +DGR DG + V+
Sbjct: 3 RDYAFVEFSDPRDADDARYYLDGRDFDGSRITVE 36
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 34.3 bits (75), Expect = 0.050
Identities = 23/59 (38%), Positives = 30/59 (50%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMD 317
V N Y T DL R+F + G V R +S G+AFV F + RDAE+A+ D
Sbjct: 6 VGNFDYDTRHSDLERLFSKFGRV-------KRVDMKS-GYAFVYFEDERDAEDAIRRTD 56
Score = 33.9 bits (74), Expect = 0.067
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +3
Query: 159 RTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD-TMDGRMLD 332
RT D+ R FE G+V ++ R R FAFV+F + DA +ALD T + ++LD
Sbjct: 106 RTRERDMERHFEPYGKVLNV--------RMRRNFAFVQFATQEDATKALDSTHNSKLLD 156
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 34.3 bits (75), Expect = 0.050
Identities = 19/64 (29%), Positives = 33/64 (51%)
Frame = +3
Query: 126 MVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL 305
M + V NL R T +L F+ G + ++++ R G+AF+ F + RDA +A+
Sbjct: 1 MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWV-----ARRPPGYAFLEFDDERDALDAI 55
Query: 306 DTMD 317
+D
Sbjct: 56 SALD 59
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 34.3 bits (75), Expect = 0.050
Identities = 19/64 (29%), Positives = 33/64 (51%)
Frame = +3
Query: 126 MVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL 305
M + V NL R T +L F+ G + ++++ R G+AF+ F + RDA +A+
Sbjct: 1 MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWV-----ARRPPGYAFLEFDDERDALDAI 55
Query: 306 DTMD 317
+D
Sbjct: 56 SALD 59
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 33.9 bits (74), Expect = 0.067
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Frame = +3
Query: 147 NLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMD--- 317
N Y DL R+F + G+V +R ++ GFAFV + RDAE+A+ +D
Sbjct: 8 NFEYDAREGDLERLFRKYGKV-------ERVDMKA-GFAFVYMEDERDAEDAIRALDRFE 59
Query: 318 -GRMLDGRELRVQ 353
GR GR LRV+
Sbjct: 60 FGR--KGRRLRVE 70
Score = 29.1 bits (62), Expect = 1.9
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +3
Query: 162 TTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRE 341
T DL + FE G++ ++ I R+ FAF+++ + DA ALD + L +
Sbjct: 109 TRTRDLEKHFEPYGKIVNVRIRRN--------FAFIQYEAQEDATRALDASNNSKLMDKV 160
Query: 342 LRVQMA 359
+ V+ A
Sbjct: 161 ISVEYA 166
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 33.9 bits (74), Expect = 0.067
Identities = 27/87 (31%), Positives = 39/87 (44%)
Frame = +3
Query: 99 GRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFF 278
GR PP L V NL + +L F R GE+ + + R +AFV F
Sbjct: 17 GRNPPSRH----LWVGNLPHGILERELADRFLRFGELESLAF------QPGRSYAFVNFN 66
Query: 279 ERRDAEEALDTMDGRMLDGRELRVQMA 359
DA A++++ G L G LR++ A
Sbjct: 67 HDEDAFAAIESLQGFPLSGNPLRIEFA 93
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 33.9 bits (74), Expect = 0.067
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +3
Query: 177 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 353
L + F R + RD+ T +++G+ FV F D AL M+G+ + R ++++
Sbjct: 153 LSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEMNGKYVGNRPIKLR 211
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 33.9 bits (74), Expect = 0.067
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +3
Query: 159 RTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD-TMDGRMLD 332
RT D+ R FE G+V ++ R R FAFV+F + DA +ALD T + ++LD
Sbjct: 80 RTRERDMERHFEPYGKVLNV--------RMRRNFAFVQFATQEDATKALDSTHNSKLLD 130
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 33.9 bits (74), Expect = 0.067
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +3
Query: 186 VFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 356
+ E CG V D T++ +GF F F A+ + R +DG+EL V +
Sbjct: 222 ILEFCGHVKSCLRAEDPTTKKPKGFGFYEFESAEGILRAIRLLTQRTIDGQELLVNV 278
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 33.5 bits (73), Expect = 0.088
Identities = 20/81 (24%), Positives = 38/81 (46%)
Frame = +3
Query: 117 IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAE 296
++G + V L Y T +R + E G + + +DR T S+G+AF + + +
Sbjct: 371 LEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTD 430
Query: 297 EALDTMDGRMLDGRELRVQMA 359
A ++G + + L V+ A
Sbjct: 431 IACAALNGIKMGDKTLTVRRA 451
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 33.1 bits (72), Expect = 0.12
Identities = 20/81 (24%), Positives = 38/81 (46%)
Frame = +3
Query: 117 IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAE 296
++G + V L Y T +R + E G + + +DR T S+G+AF + + +
Sbjct: 355 LEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTD 414
Query: 297 EALDTMDGRMLDGRELRVQMA 359
A ++G + + L V+ A
Sbjct: 415 IACAALNGIKMGDKTLTVRRA 435
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 33.1 bits (72), Expect = 0.12
Identities = 20/81 (24%), Positives = 38/81 (46%)
Frame = +3
Query: 117 IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAE 296
++G + V L Y T +R + E G + + +DR T S+G+AF + + +
Sbjct: 355 LEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTD 414
Query: 297 EALDTMDGRMLDGRELRVQMA 359
A ++G + + L V+ A
Sbjct: 415 IACAALNGIKMGDKTLTVRRA 435
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 33.1 bits (72), Expect = 0.12
Identities = 20/81 (24%), Positives = 38/81 (46%)
Frame = +3
Query: 117 IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAE 296
++G + V L Y T +R + E G + + +DR T S+G+AF + + +
Sbjct: 355 LEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTD 414
Query: 297 EALDTMDGRMLDGRELRVQMA 359
A ++G + + L V+ A
Sbjct: 415 IACAALNGIKMGDKTLTVRRA 435
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 33.1 bits (72), Expect = 0.12
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL 305
V L + T E L F++ GE+ D D+ + +S+G+ F+ + R A AL
Sbjct: 144 VHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Score = 31.1 bits (67), Expect = 0.47
Identities = 19/73 (26%), Positives = 32/73 (43%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V N+ P+ L F + GE+ + + D+YT +GF + A+ AL+
Sbjct: 249 VSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE-PH 307
Query: 321 RMLDGRELRVQMA 359
+ +G L Q A
Sbjct: 308 KTFEGHILHCQKA 320
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 33.1 bits (72), Expect = 0.12
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL 305
V L + T E L F++ GE+ D D+ + +S+G+ F+ + R A AL
Sbjct: 144 VHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Score = 31.1 bits (67), Expect = 0.47
Identities = 19/73 (26%), Positives = 32/73 (43%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V N+ P+ L F + GE+ + + D+YT +GF + A+ AL+
Sbjct: 249 VSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE-PH 307
Query: 321 RMLDGRELRVQMA 359
+ +G L Q A
Sbjct: 308 KTFEGHILHCQKA 320
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 33.1 bits (72), Expect = 0.12
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL 305
V L + T E L F++ GE+ D D+ + +S+G+ F+ + R A AL
Sbjct: 144 VHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Score = 31.1 bits (67), Expect = 0.47
Identities = 19/73 (26%), Positives = 32/73 (43%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
V N+ P+ L F + GE+ + + D+YT +GF + A+ AL+
Sbjct: 249 VSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE-PH 307
Query: 321 RMLDGRELRVQMA 359
+ +G L Q A
Sbjct: 308 KTFEGHILHCQKA 320
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 33.1 bits (72), Expect = 0.12
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL 305
V L + T + L F++ GE+ D D+ + +S+G+ F+ F R A AL
Sbjct: 132 VHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNAL 186
Score = 30.7 bits (66), Expect = 0.62
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +3
Query: 141 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD---- 308
V N++ P+ L F R GE+ + + D+ T +GFA + A++AL+
Sbjct: 231 VSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHK 290
Query: 309 TMDGRML 329
T +G +L
Sbjct: 291 TFEGHVL 297
>At3g09160.1 68416.m01082 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif (aka RRM, RBD, or RNP domain)
Length = 198
Score = 32.7 bits (71), Expect = 0.15
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +3
Query: 174 DLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDG 335
+L+++F CGE+ D++IP R AF+ F A++AL ++G + G
Sbjct: 42 ELKKLFSPCGEITDVHIPETR-NSSLWSHAFIYFVGEGTADKALQ-LNGSDMGG 93
>At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing
protein similar to Tat-SF1 - Homo sapiens, GI:1667611;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 519
Score = 31.9 bits (69), Expect = 0.27
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 252 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 356
+G VRF +RRDA++ ++ M+GR R++ +
Sbjct: 454 QGVVLVRFKDRRDAQKCIEAMNGRWYAKRQIHASL 488
>At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 259
Score = 31.9 bits (69), Expect = 0.27
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = +3
Query: 189 FERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 359
F CG+V IY+P T S G+AF+ + ++ + L T++G L GR++ V A
Sbjct: 141 FSSCGKVYLIYVPIACSTGASVGYAFI---DMKNETKGL-TLNGSHLGGRKIDVMFA 193
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 31.9 bits (69), Expect = 0.27
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +3
Query: 129 VSLKVDNLTYRTTPEDLRRVF-ERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL 305
+S+ V +L+ + L F E+ V + D T S+G+ FVRF + + +A+
Sbjct: 197 LSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
Query: 306 DTMDGRMLDGRELRV 350
M+G R +R+
Sbjct: 257 TEMNGVKCSSRAMRI 271
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 31.5 bits (68), Expect = 0.36
Identities = 20/79 (25%), Positives = 38/79 (48%)
Frame = +3
Query: 123 GMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEA 302
G L V +L + TT +L + G V ++ ++ + +S+G+ V F++ A
Sbjct: 232 GGAFLFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASAC 291
Query: 303 LDTMDGRMLDGRELRVQMA 359
D ++G +GR V+ A
Sbjct: 292 KDALNGYPFNGRPCVVEYA 310
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 31.5 bits (68), Expect = 0.36
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +3
Query: 111 PRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRD 290
P + + +L V L R +D+R F GE+ I I D + AFV + R
Sbjct: 222 PDDESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILAD------KACAFVTYTSREG 275
Query: 291 AEEALDTMDGRM-LDGRELRV 350
AE+A + R+ ++G+ L++
Sbjct: 276 AEKAAQELSNRLVINGQRLKL 296
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 31.1 bits (67), Expect = 0.47
Identities = 22/71 (30%), Positives = 36/71 (50%)
Frame = +3
Query: 132 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 311
+L V NL+ RT + + F+ EV + + + + E G FV F +A++AL
Sbjct: 490 TLFVANLSPRTKISHIIKFFKDVAEVVRVRLIVN-HRGEHVGCGFVEFASVNEAQKALQK 548
Query: 312 MDGRMLDGREL 344
M+G L RE+
Sbjct: 549 MNGENLRSREI 559
>At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing
protein RNA-binding protein LAH1, Saccharomyces
cerevisiae, PIR2:B48600; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 433
Score = 30.3 bits (65), Expect = 0.82
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +3
Query: 153 TYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRML- 329
+Y ED+ F + G+V + +P R+ ESR F+ V E E+A + M ++
Sbjct: 124 SYDVKREDVESFFSQYGKVNSVRMP--RHVAESRIFSGVALVEFPTEEDAQNVMKQNLVF 181
Query: 330 DGRELRVQ 353
G+EL ++
Sbjct: 182 AGQELELK 189
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 30.3 bits (65), Expect = 0.82
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 231 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 350
DR T ++G+ FVRF + + A+ M+G R +R+
Sbjct: 190 DRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRI 229
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 30.3 bits (65), Expect = 0.82
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 231 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 350
DR T ++G+ FVRF + + A+ M+G R +R+
Sbjct: 190 DRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRI 229
>At5g03480.1 68418.m00304 expressed protein ; expression supported
by MPSS
Length = 321
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 177 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
L + F+ CGE+ +Y+P D + AF+R E AE+ + G
Sbjct: 133 LEKHFDSCGEIRHVYVPTDYERGVLKSVAFLR-IEGEGAEDKALQLSG 179
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +3
Query: 177 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDG 335
L + F CGE+ IY+PRD + + +F+ + + AE+ + G + G
Sbjct: 44 LTKHFASCGEITQIYVPRDFKKKILKSVSFM-WIKGEGAEDKALQLSGTDVGG 95
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 29.9 bits (64), Expect = 1.1
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +3
Query: 111 PRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRD 290
P + +L V L R +D+R F GE+ I I + + AFV + R
Sbjct: 222 PEDQSIRTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAE------KACAFVTYTTREG 275
Query: 291 AEEALDTMDGRM-LDGRELRV 350
AE+A + + R+ ++G+ L++
Sbjct: 276 AEKAAEELSNRLVVNGQRLKL 296
>At1g63610.2 68414.m07192 expressed protein
Length = 341
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 318 RPSCPGLLQHHDARKTLRRRILYFPLCTDLWEC 220
RP CP L +H+ + + + FPL T+ W+C
Sbjct: 17 RP-CPSFLANHEPKLSTTSSSVTFPLKTNTWKC 48
>At1g63610.1 68414.m07191 expressed protein
Length = 340
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 318 RPSCPGLLQHHDARKTLRRRILYFPLCTDLWEC 220
RP CP L +H+ + + + FPL T+ W+C
Sbjct: 17 RP-CPSFLANHEPKLSTTSSSVTFPLKTNTWKC 48
>At1g47620.1 68414.m05289 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 520
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 127 WSR*K*IILPTERR-LKTYAAFSKGAEKLVISTFPEIGTQG 246
W K I + TE++ LK +A F + EK++ + E+G+QG
Sbjct: 235 WKLQKWIGIGTEKKMLKAHATFDRVCEKIIAAKREELGSQG 275
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 29.5 bits (63), Expect = 1.4
Identities = 21/78 (26%), Positives = 38/78 (48%)
Frame = +3
Query: 126 MVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL 305
M + V N+ + + L F G+V + + D+ T +SRGFA + A+ AL
Sbjct: 166 MRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAAL 225
Query: 306 DTMDGRMLDGRELRVQMA 359
+++DG+ L ++A
Sbjct: 226 -ADPVKVIDGKHLNCKLA 242
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 29.5 bits (63), Expect = 1.4
Identities = 21/78 (26%), Positives = 38/78 (48%)
Frame = +3
Query: 126 MVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL 305
M + V N+ + + L F G+V + + D+ T +SRGFA + A+ AL
Sbjct: 166 MRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAAL 225
Query: 306 DTMDGRMLDGRELRVQMA 359
+++DG+ L ++A
Sbjct: 226 -ADPVKVIDGKHLNCKLA 242
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 29.1 bits (62), Expect = 1.9
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +3
Query: 162 TTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRE 341
T DL + FE G++ ++ I R+ FAF+++ + DA ALD + L +
Sbjct: 68 TRTRDLEKHFEPYGKIVNVRIRRN--------FAFIQYEAQEDATRALDASNNSKLMDKV 119
Query: 342 LRVQMA 359
+ V+ A
Sbjct: 120 ISVEYA 125
>At4g16280.1 68417.m02469 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 505
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 228 RDRYTRESRGFAFVRFFERRDAEEALDTMDG 320
RD Y R+SRG FV++ + A A+D ++G
Sbjct: 2 RDEY-RQSRGCGFVKYSSKETAMAAIDGLNG 31
>At5g53700.1 68418.m06672 hypothetical protein
Length = 248
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 177 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 308
L + F CG++ DI +PRD R + F+ F ++ E +D
Sbjct: 38 LAKHFASCGKIVDIDVPRDFKKRILKSPLFI-IFHAKEGESPVD 80
>At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing
protein contains Pfam domain PF00076: RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 461
Score = 27.9 bits (59), Expect = 4.4
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = +3
Query: 177 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 353
L + F CGE+ +++PR+ T +GF A++AL+ + G + G+EL V+
Sbjct: 364 LSKHFSVCGEITRVFVPRNPSTGAIKGF---------KAKKALE-LSGSKMTGKELVVK 412
>At3g45850.1 68416.m04962 kinesin motor protein-related
kinesin-related protein TKRP125, Nicotiana tabacum,
PIR:T02017
Length = 1058
Score = 27.5 bits (58), Expect = 5.8
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 204 EVGDIYIPRDRYTR-ESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 344
E IYIP+DRY + E+ A ER + + ++ D R++D +EL
Sbjct: 425 EKNGIYIPKDRYIQEEAEKKAMAEKIERLELQS--ESKDKRVVDLQEL 470
>At3g23410.1 68416.m02951 alcohol oxidase-related similar to long
chain fatty alcohol oxidase from Candida cloacae
[GI:6983581], Candida tropicalis [GI:6983594]
Length = 746
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -3
Query: 513 NVPWNSLSQSESDCANGCGYDC-ASNYDGGNETW 415
NVP NS SES CGY C + G + TW
Sbjct: 381 NVPRNS---SESHYCGSCGYGCRQGDKKGSDRTW 411
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 249 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 359
S F F + RDA++A +DGR DG + V+ +
Sbjct: 13 SSHFRNQEFGDPRDADDARHYLDGRDFDGSRITVEFS 49
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,874,849
Number of Sequences: 28952
Number of extensions: 203212
Number of successful extensions: 812
Number of sequences better than 10.0: 215
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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