Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS311H04f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 34 0.015
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 29 0.42
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 28 0.73
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 27 1.7
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 27 2.2
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 2.2
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 27 2.2
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 26 3.0
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 26 3.0
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 26 3.9
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ... 25 5.2
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 5.2
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 5.2
SPCC584.02 |cuf2||Cu metalloregulatory transcription factor Cuf2... 25 5.2
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 5.2
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 25 5.2
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 5.2
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 25 5.2
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 25 6.8
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch... 25 6.8
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 25 6.8
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 25 9.0
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 25 9.0
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc... 25 9.0
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom... 25 9.0
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 33.9 bits (74), Expect = 0.015
Identities = 30/123 (24%), Positives = 53/123 (43%)
Frame = +2
Query: 11 SSSKIY*FRMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA 190
S SK+ +A S + ++ D P+ +T S L+ F+T + + + VLPS D
Sbjct: 26 SPSKVCRDNIALSEHNVITVLDTPQRSTQCDSLLKSFSTPLV----SGSEDVLPSPRDAL 81
Query: 191 TEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 370
+KS+ D + +S + T T NP +++ + N L + + H
Sbjct: 82 NITNKKSVTDNLLLSLTSSNQSTNT-NLNPSSRVEIINLNSSPPNSLSSQPKHQEFHLFH 140
Query: 371 TTT 379
T T
Sbjct: 141 TPT 143
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 29.1 bits (62), Expect = 0.42
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +1
Query: 199 DPEVF-IRRYREV*FEPAEAHRDSGEEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHD 375
DPE++ +RR P + D+ ++ + R G R RT+R DEA
Sbjct: 55 DPELYGLRRSGRTRSNPGR-YVDTDDQEDVFPSKHRKGTRNGSSFSRHRTIRDLDDEAES 113
Query: 376 DGRKESTAPDRSY 414
+ES + D SY
Sbjct: 114 VTSEESESDDSSY 126
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 28.3 bits (60), Expect = 0.73
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Frame = +2
Query: 77 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSA-------EDVATEKTQKSLFDGIEKF 235
L K +TDL +Q E FN C + D + +V A E V E+ + DG+E
Sbjct: 428 LNKWSTDLTTQTEVFNKLCDQVSDWDRTLVDNGALISKLYTETVEAEQMSNRIDDGLEYV 487
Query: 236 DSSQ 247
SSQ
Sbjct: 488 SSSQ 491
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/62 (20%), Positives = 28/62 (45%)
Frame = +2
Query: 179 EDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKT 358
EDV E+ + + E D + ++ E + +N P+ + + G+E +D+T
Sbjct: 248 EDVDEEEEEDDDENNDEGDDEDENENDELRSENGSPNPSAAVINEQENMNMSGIEEYDET 307
Query: 359 QM 364
+
Sbjct: 308 NL 309
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -3
Query: 195 SVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 64
SV + DG + + +++RQ V+ P + F + +GR F+E
Sbjct: 86 SVVAFTKDGERLVGV--SAKRQAVINPENTFFATKRLIGRRFKE 127
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = +1
Query: 334 RSRTLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRE 459
R+ + ++HD G S + DR + K++ +HRE
Sbjct: 710 RTERKKDTQKQSHDHGHSHSKSHDREKEKEKKKDREHRKHRE 751
>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 26.6 bits (56), Expect = 2.2
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Frame = +2
Query: 62 PSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGI----E 229
P K L K+ +L+S L+ SCL+D T+ K ++ +EKTQ+ +FD + +
Sbjct: 14 PGNKCLAKL-NELESILKDAKKSCLKDPTTSMKELV-----ACSEKTQQ-VFDDLKRTEK 66
Query: 230 KFDSSQLKHTETQEK 274
KF +S + +T EK
Sbjct: 67 KFHTSLNRFGKTLEK 81
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 202 GLLSGNVFSRRKHNLFIGVDVTETAGVEAFELTLQ 98
G ++G +S +LFIGVD G+ F LQ
Sbjct: 385 GEIAGTAYSSSGDSLFIGVDDPMLGGILEFRRPLQ 419
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 3.0
Identities = 22/71 (30%), Positives = 34/71 (47%)
Frame = +2
Query: 146 DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQN 325
D EK V S + E+ QK++ D E+ D + T T K+ + EK HQ
Sbjct: 131 DATEKFVTSSYKK-HREEVQKAIEDRKEE-DEKSITDTTTGMKDFYASM-LDRQEKIHQA 187
Query: 326 LLDGVEHFDKT 358
++GV++ KT
Sbjct: 188 AVEGVQNSKKT 198
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.8 bits (54), Expect = 3.9
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = +2
Query: 161 IVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPD 289
+ L S ED+ + T+ S+ + + +++HT + K +P+
Sbjct: 134 VALKSEEDIPSSVTRLSVVKLVNRVTYERMRHTMLEFKRSIPE 176
>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -1
Query: 302 RQRLCPEAGSSPESRCASAGSNQTSRYRRIKTSGSSQ 192
+QR+ PE S PE+ + +N ++ + TS + Q
Sbjct: 235 QQRINPETSSVPETPVGVSAANVSNESTELATSATQQ 271
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 204 WVFSVATSSADGSTIFSLVSTSRRQL 127
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 204 WVFSVATSSADGSTIFSLVSTSRRQL 127
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPCC584.02 |cuf2||Cu metalloregulatory transcription factor
Cuf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 167 LPSAEDVATEKTQKSLFDGIEKFDSSQLKHTE 262
LP +ED+ + SL D + D+SQL E
Sbjct: 117 LPISEDILGYRKPLSLTDASNRIDASQLNEKE 148
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 204 WVFSVATSSADGSTIFSLVSTSRRQL 127
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
aminotransferase Eca39|Schizosaccharomyces pombe|chr
2|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 203 QKSLFDGIEKFDSSQLKHTETQEKNPLPD 289
Q + G + DSS +K T +E PLP+
Sbjct: 3 QTAALHGPKPMDSSHIKVTNVKELKPLPE 31
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 204 WVFSVATSSADGSTIFSLVSTSRRQL 127
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 207 FWVFSVATSSADGSTIFSLVSTSRRQLVLKPSS 109
FW +S+ S G I SL + RQ + +PSS
Sbjct: 83 FWGYSLTFSHEGGPYIGSLANFGLRQTLGRPSS 115
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 403 DRSYRSGEGKEQIPERHRELR 465
D S R G +IP+RHR+ R
Sbjct: 2 DLSSRLSSGSSRIPKRHRDYR 22
>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 25.0 bits (52), Expect = 6.8
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +2
Query: 56 DTPSLKDLPKVATDLKSQL--EGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIE 229
D P+ D+ V T+L++ + + + R + +E + T + + + + I+
Sbjct: 2 DDPNSYDVIIVGTNLRNSILSAALSWANQRVLHIDENSFYGEIDGSLTLRDLEQINEKIK 61
Query: 230 KFDSSQLKHTETQEKNPL 283
K DSSQ+ + K+PL
Sbjct: 62 KVDSSQILNDNGSHKSPL 79
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 25.0 bits (52), Expect = 6.8
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Frame = +2
Query: 143 VDTNEKIVLPSA--EDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKA 316
+ T KI + S E+++ K + + Q HTE Q P++ V E
Sbjct: 391 MSTPPKIEIESKIEEEISVVSKSKEISSSVSSVGKEQ-NHTEKQVAIETPEQQKVEKEDE 449
Query: 317 HQNL 328
H NL
Sbjct: 450 HLNL 453
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 24.6 bits (51), Expect = 9.0
Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 1/112 (0%)
Frame = +2
Query: 62 PSLKDLPKVAT-DLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFD 238
PSLK V++ + K + + L D + + +++ G E
Sbjct: 606 PSLKTTTDVSSPETKQNIADIRKTTLTDQTEEFTERRDNNGSIPSKQPSDEQHLGKESLP 665
Query: 239 SSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNP 394
S Q + K +P K + A Q L + + ++ +T K P
Sbjct: 666 SQQSTVSNHHRKESIPSKQPTEGQHARQESLPSQQTTETKHLRKESTPSKQP 717
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 24.6 bits (51), Expect = 9.0
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +2
Query: 71 KDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQL 250
+DL +A S L NT R +D N K L E++ ++ + L EKF + +
Sbjct: 786 RDLVNMAKRFLSSLFSVNT---RKMDVNVKTDLVIGENIELQRYLQQLTQYSEKFLNKES 842
Query: 251 KHT 259
++T
Sbjct: 843 ENT 845
>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 134 LRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKH 256
L DVDT ++VL E Q+ DGI +FD+ +KH
Sbjct: 200 LADVDTENEVVLSVLEKWIKNVVQEYDIDGI-RFDA--IKH 237
>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/65 (24%), Positives = 26/65 (40%)
Frame = +2
Query: 296 VVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLXXXXXXXXXXXXNKFLNGIENFDPTK 475
+++AE ++ HF K +++ K PL + FLN I F+ K
Sbjct: 459 LISAEVQTSSVTPDYTHF-KEEVRKIIDSSKEPLIPFLKRSTLTENDLFLNAIYTFEYAK 517
Query: 476 LKHTE 490
K E
Sbjct: 518 RKFPE 522
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,070,686
Number of Sequences: 5004
Number of extensions: 40855
Number of successful extensions: 197
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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