Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS311H04f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g29470.1 68414.m03605 dehydration-responsive protein-related ... 33 0.15
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ... 31 0.36
At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase f... 30 0.82
At5g22640.1 68418.m02645 MORN (Membrane Occupation and Recogniti... 30 1.1
At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative si... 29 1.4
At1g70620.1 68414.m08138 cyclin-related contains weak similarity... 29 1.4
At5g51410.2 68418.m06374 LUC7 N_terminus domain-containing prote... 29 1.9
At5g51410.1 68418.m06373 LUC7 N_terminus domain-containing prote... 29 1.9
At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containi... 29 2.5
At5g53800.1 68418.m06685 expressed protein 28 3.3
At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase f... 28 3.3
At3g53640.1 68416.m05925 protein kinase family protein contains ... 28 4.4
At1g70620.2 68414.m08137 cyclin-related contains weak similarity... 28 4.4
At1g19000.2 68414.m02364 myb family transcription factor similar... 28 4.4
At1g19000.1 68414.m02363 myb family transcription factor similar... 28 4.4
At5g12410.1 68418.m01459 THUMP domain-containing protein contain... 27 5.8
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 27 5.8
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 27 7.7
At5g20540.1 68418.m02439 expressed protein 27 7.7
At5g17690.1 68418.m02073 like heterochromatin protein (LHP1) ide... 27 7.7
At5g16120.1 68418.m01883 hydrolase, alpha/beta fold family prote... 27 7.7
At4g37820.1 68417.m05351 expressed protein Kaposi's sarcoma-asso... 27 7.7
At4g15820.1 68417.m02407 wound-responsive protein-related contai... 27 7.7
At4g04695.1 68417.m00689 calcium-dependent protein kinase, putat... 27 7.7
At2g46790.1 68415.m05837 pseudo-response regulator 9 (APRR9) / t... 27 7.7
At1g34160.1 68414.m04237 pentatricopeptide (PPR) repeat-containi... 27 7.7
At1g28100.2 68414.m03441 expressed protein 27 7.7
At1g28100.1 68414.m03440 expressed protein 27 7.7
>At1g29470.1 68414.m03605 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 770
Score = 32.7 bits (71), Expect = 0.15
Identities = 24/107 (22%), Positives = 48/107 (44%)
Frame = +2
Query: 71 KDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQL 250
KD+ +D KS+ + D E V+ + T+ + + EK +S++
Sbjct: 57 KDVDTTKSDFKSEEVDRGSKSFPDEKNEETEVVTETNEEKTDPEKSGEENSGEKTESAE- 115
Query: 251 KHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKN 391
+ E +KN D+ EK ++ D + +KTQ++ ++ E K+
Sbjct: 116 ERKEFDDKNGDGDRKNGDGEKDTESESDETKQKEKTQLEESSEENKS 162
>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
SP|Q07283 Trichohyalin {Homo sapiens}
Length = 1400
Score = 31.5 bits (68), Expect = 0.36
Identities = 20/86 (23%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = +2
Query: 137 RDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKA 316
R+ + NE+ + + E E+ K+ + EK Q+K + +E+N K+V+ +
Sbjct: 744 REKEENERRIKEAREKAELEQRLKATLEQEEK--ERQIKERQEREENERRAKEVLEQAEN 801
Query: 317 HQNLLDGVEHFD-KTQMKHTTTEEKN 391
+ L + +E + + ++K T +E+N
Sbjct: 802 ERKLKEALEQKENERRLKETREKEEN 827
>At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase
family protein / UPP synthetase family protein contains
putative undecaprenyl diphosphate synthase domain
[PF01255]; similar to S. cerevisiae dehydrodolichyl
diphosphate synthetase (DEDOL-PP
synthase)(Rer2)[SP|P35196], a cis-prenyltransferase
Length = 271
Score = 30.3 bits (65), Expect = 0.82
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -2
Query: 199 LLSGNVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLG 80
++ GN +KHNL IG+D AG + + LQ C ++G
Sbjct: 41 IMDGNRRFAKKHNL-IGLDAGHRAGFISVKYILQYCKEIG 79
>At5g22640.1 68418.m02645 MORN (Membrane Occupation and Recognition
Nexus) repeat-containing protein contains Pfam profile
PF02493: MORN repeat
Length = 871
Score = 29.9 bits (64), Expect = 1.1
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = +2
Query: 194 EKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHT 373
EK+ K + DG+EK+ + K E +++ + ++V AE L + +E D+ K
Sbjct: 581 EKSVKPMLDGLEKWTEEKKKAYEERKEMIQQELELVEAEIC---LEEAIEDMDEELKKKE 637
Query: 374 TTEEK 388
EEK
Sbjct: 638 QEEEK 642
>At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative
similar to sucrose-phosphate synthase isoform 1, Citrus
unshiu, PIR:S72648
Length = 894
Score = 29.5 bits (63), Expect = 1.4
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Frame = +2
Query: 47 SVSDTPS--LKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA-TEKTQKSLF 217
S SD+PS L+D+ ++ +LK L+G + VDTN +AE A EK +L
Sbjct: 532 SDSDSPSDSLRDINDISLNLKLSLDGEKSGSNNGVDTNLDAEDRAAERKAEVEKAVSTLA 591
Query: 218 D---GIEKFDS 241
EKFDS
Sbjct: 592 QKSKPTEKFDS 602
>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 897
Score = 29.5 bits (63), Expect = 1.4
Identities = 18/69 (26%), Positives = 31/69 (44%)
Frame = +1
Query: 262 DSGEEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQI 441
+S ++ R R SP R + SDE+ DD +++S++ ++ GK +
Sbjct: 794 ESSDDSKRKSRSRRRSVSPSPVRSRRKRSSPSSDESSDDSKRKSSSKRKNRSPSPGKSR- 852
Query: 442 PERHRELRS 468
RH RS
Sbjct: 853 -RRHVSSRS 860
>At5g51410.2 68418.m06374 LUC7 N_terminus domain-containing protein
similar to cisplatin resistance-associated overexpressed
protein [Homo sapiens] GI:6899846; contains Pfam profile
PF03194: LUC7 N_terminus
Length = 334
Score = 29.1 bits (62), Expect = 1.9
Identities = 23/69 (33%), Positives = 27/69 (39%)
Frame = +1
Query: 301 RSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH*AE 480
RSG S E R R +D D D GR DR RSG + +R R H
Sbjct: 266 RSGSSDRERY-RDRDRNRDGDRHRDRGRDYRKPYDRRSRSG---REDRDRSRSRSPHGRS 321
Query: 481 AHGDVRKEP 507
H V + P
Sbjct: 322 GHRRVSRSP 330
>At5g51410.1 68418.m06373 LUC7 N_terminus domain-containing protein
similar to cisplatin resistance-associated overexpressed
protein [Homo sapiens] GI:6899846; contains Pfam profile
PF03194: LUC7 N_terminus
Length = 334
Score = 29.1 bits (62), Expect = 1.9
Identities = 23/69 (33%), Positives = 27/69 (39%)
Frame = +1
Query: 301 RSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH*AE 480
RSG S E R R +D D D GR DR RSG + +R R H
Sbjct: 266 RSGSSDRERY-RDRDRNRDGDRHRDRGRDYRKPYDRRSRSG---REDRDRSRSRSPHGRS 321
Query: 481 AHGDVRKEP 507
H V + P
Sbjct: 322 GHRRVSRSP 330
>At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containing
protein contains Pfam profile PF01388: ARID/BRIGHT DNA
binding domain
Length = 786
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +2
Query: 47 SVSDTPSLKDLPKVATDLKSQLEGF---NTSCLRDVDTNEKIVLPSAEDVATEKTQKS 211
S+ + + DLPK+ + SQ E + S +DT E ++ P+AED E S
Sbjct: 78 SLEEVTNADDLPKIDDEKNSQFETSPHPSPSPSVALDTEEGLINPTAEDTVEENIVSS 135
>At5g53800.1 68418.m06685 expressed protein
Length = 351
Score = 28.3 bits (60), Expect = 3.3
Identities = 20/72 (27%), Positives = 27/72 (37%)
Frame = +1
Query: 250 EAHRDSGEEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSGEG 429
E+ +S +E R+ R RSR R+D + D ES + Y E
Sbjct: 67 ESGSESEKEERRRSRKDRGKRKSDRKSSRSRRRRRDYSSSSSDSESES---ESEYSDSEE 123
Query: 430 KEQIPERHRELR 465
E ER R R
Sbjct: 124 SESEDERRRRKR 135
>At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase
family protein similar to pVHL-interacting
deubiquitinating enzyme 1 type II [Homo sapiens]
GI:18698435; contains Pfam profile PF00443: Ubiquitin
carboxyl-terminal hydrolase
Length = 974
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = +1
Query: 271 EEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSGEG 429
E +R +SPP PLG + L ++ DD +E +S G G
Sbjct: 446 EREVKRKRVMERSDSPPPPLGFNNPLLPLANTYDDDDEEEENEQKKSQARGNG 498
>At3g53640.1 68416.m05925 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 642
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/55 (25%), Positives = 22/55 (40%)
Frame = +1
Query: 259 RDSGEEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSG 423
R+S + G+ S GR + D+ D GR+E + Y+SG
Sbjct: 82 RESNRDNYRGRSSRDKARSSSRETGRENERERRKDQDRDRGRREDQSDQEIYKSG 136
>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide I)
[Bos taurus]
Length = 884
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/59 (23%), Positives = 27/59 (45%)
Frame = +1
Query: 262 DSGEEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQ 438
+S ++ R R SP R + SDE+ DD +++S++ ++ GK +
Sbjct: 824 ESSDDSKRKSRSRRRSVSPSPVRSRRKRSSPSSDESSDDSKRKSSSKRKNRSPSPGKSR 882
>At1g19000.2 68414.m02364 myb family transcription factor similar to
MybSt1 GI:7705206 from [Solanum tuberosum]
Length = 285
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 197 KTQKSLFD-GIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLD 334
+ + SLFD E ++ TQE +PLP+ ++ + ++A Q D
Sbjct: 158 RRRSSLFDITTETVTEMAMEQDPTQENSPLPETNISSGQQAMQVFTD 204
>At1g19000.1 68414.m02363 myb family transcription factor similar to
MybSt1 GI:7705206 from [Solanum tuberosum]
Length = 285
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 197 KTQKSLFD-GIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLD 334
+ + SLFD E ++ TQE +PLP+ ++ + ++A Q D
Sbjct: 158 RRRSSLFDITTETVTEMAMEQDPTQENSPLPETNISSGQQAMQVFTD 204
>At5g12410.1 68418.m01459 THUMP domain-containing protein contains
Pfam profile PF02926: THUMP domain
Length = 376
Score = 27.5 bits (58), Expect = 5.8
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +2
Query: 146 DTNEKIVLPSAEDVATEKTQKSLFDGI-EKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQ 322
D ++ +V D+ EK S +G+ ++ + ++ + E L + + V E+
Sbjct: 110 DGDKAVVSEGGNDLVNEKEIAS--EGVNDQVNEKEIASEGSCEVKQLAENETVKEEEDKG 167
Query: 323 NLLDGVEHFDKTQMKHTTTEEKNPL 397
N +G D+ K T TEE NPL
Sbjct: 168 NQKNGG---DEPPRKKTCTEEANPL 189
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 241 EPAEAHRDSGEEPASGQRRCRSGESPPEPLGRSRTLRQDSDE 366
+P + R +GE P RR RS + P+ +R SDE
Sbjct: 582 DPRKTSRQTGETPVISTRRARSTPARVMPIVLNRDSNVTSDE 623
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 27.1 bits (57), Expect = 7.7
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Frame = +1
Query: 244 PAEAHRDSGEEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSG 423
P E R+S P +RR SPP R R S + ++G+ ES +G
Sbjct: 277 PYEKRRESRSPPPYEKRR--ESRSPPPYEKRRERSRSRSKSSPENGQVESPGQIMEVEAG 334
Query: 424 EGKE--QIPERHRELRSH*AE 480
G + P R RS AE
Sbjct: 335 RGYDGADSPIRESPSRSPPAE 355
>At5g20540.1 68418.m02439 expressed protein
Length = 384
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +2
Query: 50 VSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 196
++ TP + + T+ S +S RD D +E++ + +A DV E
Sbjct: 282 LNSTPKVSSISVAKTETSSIDASIRSSSSRDADRSEEMSVSNASDVDNE 330
>At5g17690.1 68418.m02073 like heterochromatin protein (LHP1)
identical to like heterochromatin protein LHP1
[Arabidopsis thaliana] GI:15625407; contains Pfam
profile PF00385: 'chromo' (CHRromatin Organization
MOdifier)
Length = 445
Score = 27.1 bits (57), Expect = 7.7
Identities = 18/61 (29%), Positives = 24/61 (39%)
Frame = +1
Query: 268 GEEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPE 447
G + G SGES +G R +D DE ++ E D GEG+ E
Sbjct: 41 GSDDGGGGGGGGSGESILREIGDDRPT-EDGDEEEEEDEDEDDGGDEEDEEGEGEGGQEE 99
Query: 448 R 450
R
Sbjct: 100 R 100
>At5g16120.1 68418.m01883 hydrolase, alpha/beta fold family protein
similar to monoglyceride lipase from [Homo sapiens]
GI:14594904, [Mus musculus] GI:2632162; contains Pfam
profile PF00561: hydrolase, alpha/beta fold family
Length = 351
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 260 ETQEKNPLPDKDVVAAEKAHQNLLDG 337
E EK PDK +V E A+ +LL+G
Sbjct: 294 ELYEKAKSPDKKIVLYENAYHSLLEG 319
>At4g37820.1 68417.m05351 expressed protein Kaposi's
sarcoma-associated herpes-like virus ORF73gene, Kaposi's
sarcoma-associated herpesvirus, U52064
Length = 532
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/63 (23%), Positives = 27/63 (42%)
Frame = +1
Query: 271 EEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPER 450
EE + + ES + G++ S + + + E + S GEGKE+ PE+
Sbjct: 296 EEDEKEKVQSSEEESKVKESGKNEKDASSSQDESKEEKPERKKKEESSSQGEGKEEEPEK 355
Query: 451 HRE 459
+
Sbjct: 356 REK 358
>At4g15820.1 68417.m02407 wound-responsive protein-related contains
weak similarity to KED [Nicotiana tabacum]
gi|8096269|dbj|BAA95789
Length = 460
Score = 27.1 bits (57), Expect = 7.7
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +2
Query: 23 IY*FRMACSV---SDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 163
I+ F+ C+V D+ + P+V++D EG N L DV+ NEKI
Sbjct: 92 IFAFQTVCAVLFLGDSTKSEKTPEVSSDS----EGNNLVLLEDVEMNEKI 137
>At4g04695.1 68417.m00689 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calcium-dependent protein
kinase [Lycopersicon esculentum]
gi|19171502|emb|CAC87494; contains protein kinase
domain, Pfam:PF00069; contains EF hand domain
(calcium-binding EF-hand), Pfam:PF00036,
INTERPRO:IPR002048
Length = 484
Score = 27.1 bits (57), Expect = 7.7
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Frame = +2
Query: 77 LPKVATDL-KSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLK 253
L +A +L + +++G T ++DT++ + + E++ T T+ L + K + QL
Sbjct: 322 LKVIAANLSEEEIKGLKT-LFTNIDTDKSGTI-TLEELKTGLTR--LGSNLSKTEVEQLM 377
Query: 254 HTETQEKNPLPDKDVVAAEKAHQNLLD-------GVEHFDKTQMKHTTTEE 385
+ N D D + H+ LD +HFDK H T EE
Sbjct: 378 EAADVDGNGTIDIDEFISATMHRYRLDRDDHVYQAFQHFDKDNDGHITKEE 428
>At2g46790.1 68415.m05837 pseudo-response regulator 9 (APRR9) /
timing of CAB expression 1-like protein (TL1) identical
to pseudo-response regulator 9 GI:10281000 from
[Arabidopsis thaliana], timing of CAB expression 1-like
protein [Arabidopsis thaliana] GI:9247022; contains Pfam
profile PF00072: Response regulator receiver domain;
identical to cDNA timing of CAB expression 1-like
protein GI:9247021
Length = 468
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 421 RFDSFDRGQWILFFRRRVLHLSLVEVFYSVQEVLVGFLR 305
R S + QW + + VL + LVE YS ++++ LR
Sbjct: 19 RVKSSEVVQWEKYLPKTVLRVLLVESDYSTRQIITALLR 57
>At1g34160.1 68414.m04237 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 558
Score = 27.1 bits (57), Expect = 7.7
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = -2
Query: 208 LLGLLSGNVFSRRKHNLFIGVDVTETAGVEAFELT----LQVCGDLGEVFQGGSVTHGAG 41
+ GL+SGN S L+ + ET G+ E+T L C LG+V +G ++ HG
Sbjct: 182 IAGLVSGNRASEAME-LYKRM---ETEGIRRSEVTVVAALGACSHLGDVKEGENIFHGYS 237
Query: 40 HSESI 26
+ I
Sbjct: 238 NDNVI 242
>At1g28100.2 68414.m03441 expressed protein
Length = 282
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 313 SPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRE 459
+PP + + +SDEA GRKE P + R + +P++ R+
Sbjct: 81 NPPTSCAWAARVLVNSDEACHHGRKEVGLPSQVARFSKNITAVPKQKRD 129
>At1g28100.1 68414.m03440 expressed protein
Length = 282
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 313 SPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRE 459
+PP + + +SDEA GRKE P + R + +P++ R+
Sbjct: 81 NPPTSCAWAARVLVNSDEACHHGRKEVGLPSQVARFSKNITAVPKQKRD 129
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,269,912
Number of Sequences: 28952
Number of extensions: 233977
Number of successful extensions: 1056
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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