Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311H03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    28   0.73 
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   3.0  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   3.0  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    25   9.0  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.0  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    25   9.0  

>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 922

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
 Frame = -1

Query: 371  PTKNYGPEKPL-----ITSSDYFLKHLENIHSHK*DT*VSFLMPNIEHY-SLVP-LQVHY 213
            P K  GP  P+     +++ +Y L   + I S   D   + L+   EH  SL   + +  
Sbjct: 770  PGKARGPRNPILAHLGVSAEEYVLNTFKKIRSSHLDD--ALLVLPFEHVLSLFRFIDIWA 827

Query: 212  CCHWSIPSASRVFLSVLRHY 153
               WSIP  SR+   +LR Y
Sbjct: 828  SRKWSIPLVSRIIFFLLRTY 847


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 134 RLPACSPLNGSTTHLTSS*DNYWTPQL 54
           +LPA S L+  +T  TS+ D+ WT +L
Sbjct: 94  QLPALSALSALSTLTTSANDDLWTARL 120


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 134 RLPACSPLNGSTTHLTSS*DNYWTPQL 54
           +LPA S L+  +T  TS+ D+ WT +L
Sbjct: 94  QLPALSALSALSTLTTSANDDLWTARL 120


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 129 QAKGPVVAIVPQNRQEHTTRRRDTP 203
           Q KG   +IVP+ R+E   + R TP
Sbjct: 291 QGKGMKWSIVPEFREEFIAKTRKTP 315


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1379

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 156  VPQNRQEHTTRRRDTPVTAVVNLKRNQTIVL 248
            VPQ + +H   R D    +  NL++++T+ L
Sbjct: 1192 VPQKKHKHFYHRDDGKYKSGTNLRKSETVDL 1222


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 194 PSASRVFLSVLRHYCYHWPLRL 129
           PS    FLS +RH+ YH  + L
Sbjct: 154 PSEVHQFLSSMRHFTYHTNVNL 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,992,509
Number of Sequences: 5004
Number of extensions: 37360
Number of successful extensions: 90
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)